Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F73 I1 R1
|
30 |
54.0 |
1878228 |
99.2% |
1863202 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,367,031 |
C→T |
E433K (GAA→AAA) |
aspA ← |
aspartate ammonia‑lyase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,367,031 | 0 | C | T | 100.0%
| 225.2
/ NA
| 63 | E433K (GAA→AAA) | aspA | aspartate ammonia‑lyase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (30/33); total (30/33) |
CTGTTCGCTTTCATCAGTATAGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTCGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGTGATGCCGTTAATGCAT > NC_000913/4366894‑4367161
|
cTGTTCGCTTTCATCAGTATAGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTgg > 1:21531/1‑140 (MQ=255)
gTTCGCTTTCATCAGTATAGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGca > 2:418045/1‑140 (MQ=255)
gTTCGCTTTCATCAGTATAGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGca > 2:369577/1‑140 (MQ=255)
tcatcaGTATAGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGAtttt < 2:260160/140‑1 (MQ=255)
tcaGTATAGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTAAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTAcc > 2:241249/1‑140 (MQ=255)
ataGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGa < 2:706189/140‑1 (MQ=255)
ataGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGa < 1:580122/140‑1 (MQ=255)
aGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATg > 2:522364/1‑140 (MQ=255)
aGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATg > 1:513818/1‑140 (MQ=255)
gCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGt < 1:458231/140‑1 (MQ=255)
gCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGt < 1:616635/140‑1 (MQ=255)
gCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGt < 2:21531/140‑1 (MQ=255)
gCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGt < 2:831103/140‑1 (MQ=255)
ttttGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCAc > 2:162264/1‑140 (MQ=255)
ttGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCg > 2:396019/1‑140 (MQ=255)
tGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCg < 2:928050/139‑1 (MQ=255)
tGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCg > 1:928050/1‑139 (MQ=255)
tGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGt > 2:864401/1‑140 (MQ=255)
tGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGt > 2:689376/1‑140 (MQ=255)
gTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTgtggt < 1:843781/140‑1 (MQ=255)
tAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTgtggtg < 2:803347/140‑1 (MQ=255)
tAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTgtggtg > 1:56903/1‑140 (MQ=255)
tGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGaa < 2:26732/140‑1 (MQ=255)
cAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGt > 1:848643/1‑140 (MQ=255)
aGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGtt < 1:733385/140‑1 (MQ=255)
aGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGtt < 1:881226/140‑1 (MQ=255)
aTTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCa > 1:709058/1‑140 (MQ=255)
aTTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCa > 1:738491/1‑140 (MQ=255)
tCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAgg < 2:56903/140‑1 (MQ=255)
tCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAgg < 1:649519/140‑1 (MQ=255)
tGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGgta < 1:369577/140‑1 (MQ=255)
tGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGgta < 2:643150/140‑1 (MQ=255)
aCGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGgtaagt > 2:588691/1‑140 (MQ=255)
gagaAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCATGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAAc > 1:689104/1‑140 (MQ=255)
gagaAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAAc > 2:248879/1‑140 (MQ=255)
cGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATa < 1:588691/140‑1 (MQ=255)
gTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATag > 2:28013/1‑140 (MQ=255)
gTTCCGCTTCAGTCAATAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTg < 2:741490/140‑1 (MQ=255)
cAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTaa < 2:494307/140‑1 (MQ=255)
gTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAAcc > 1:607179/1‑140 (MQ=255)
tCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCt < 2:192233/140‑1 (MQ=255)
aCAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCg < 2:345310/140‑1 (MQ=255)
cAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGc < 2:513818/140‑1 (MQ=255)
cAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGc < 1:241249/140‑1 (MQ=255)
aGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGca < 1:689376/140‑1 (MQ=255)
aGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGca < 1:248879/140‑1 (MQ=255)
aGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGca < 1:768522/140‑1 (MQ=255)
gACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAGCGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGcac < 1:264471/140‑1 (MQ=255)
aCCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGcaca > 2:493004/1‑140 (MQ=255)
aCCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGcaca > 1:7196/1‑140 (MQ=255)
aCCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGcaca > 2:747569/1‑140 (MQ=255)
cgcgTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACAct > 2:171055/1‑140 (MQ=255)
cgcgTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACAct < 2:607179/140‑1 (MQ=255)
cgcgTTCCAGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACAct > 1:315117/1‑140 (MQ=255)
aGAACGACTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGtt > 2:257096/1‑140 (MQ=255)
aCTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGt < 1:711500/140‑1 (MQ=255)
cTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAg < 1:781488/135‑1 (MQ=255)
cTTCACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAg > 2:781488/1‑135 (MQ=255)
cACGTACACTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGTGATg < 1:28013/140‑1 (MQ=255)
cacTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGTGATGCCGTTa > 1:550700/1‑140 (MQ=255)
acTCTTACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGTGATGCCGTTaa < 1:257096/140‑1 (MQ=255)
ttACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGTGATGCCGTTAATGCa > 2:334530/1‑140 (MQ=255)
tACCGGTTTTGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGTGATGCCGTTAATGCAt > 1:692752/1‑140 (MQ=255)
|
CTGTTCGCTTTCATCAGTATAGCGTTTTGCTTTGTAAGCCGGGTGCATCAGATTCTGTACGGAGAAAATATCGTCAAGTTCCGCTTCAGTCAACAGACCGCGTTCCAGAACGACTTCACGTACACTCTTACCGGTTTCGGCACAGATTTTACCCACGATGTCACCGTTGTGGTGACCGATGAACGGGTTCAGGTAAGTAACGATACCGATAGAGTTGTAAACGTAACCTTCGCACACTTCTTTGTTAGCAGTGATGCCGTTAATGCAT > NC_000913/4366894‑4367161
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A