Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A17 F73 I1 R1	29	73.2	2528136	99.3%	2510439	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,982,040	G→A	P48L (CCG→CTG)	araE ←	arabinose:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,982,040	0	G	A	100.0%	382.0 / NA	105	P48L (CCG→CTG)	araE	arabinose:H(+) symporter
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (56/49); total (56/49)

Only 100 of 107 total aligned reads displayed.

GCCATCAGGCTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGTATTGATAGT  >  NC_000913/2981902‑2982176

gCCATCAGGC‑‑TATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCa                                                                                                                                       <  1:943380/140‑1 (MQ=255)

         cTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTcc                                                                                                                                <  1:656151/140‑1 (MQ=255)

         cTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTcc                                                                                                                                <  1:255332/140‑1 (MQ=255)

         cTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCACCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTcc                                                                                                                                <  1:743100/140‑1 (MQ=255)

            tATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGc                                                                                                                             >  2:801390/1‑140 (MQ=255)

            tATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGc                                                                                                                             >  2:706666/1‑140 (MQ=255)

                tACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGAtt                                                                                                                         <  1:42884/140‑1 (MQ=255)

                     cccAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGcc                                                                                                                    <  2:823468/140‑1 (MQ=255)

                     cccAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGcc                                                                                                                    <  2:376505/140‑1 (MQ=255)

                        aGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGat                                                                                                                 >  1:730379/1‑140 (MQ=255)

                          gCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGatat                                                                                                               <  1:1251236/140‑1 (MQ=255)

                          gCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGatat                                                                                                               >  1:681119/1‑140 (MQ=255)

                          gCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGatat                                                                                                               <  2:1214190/140‑1 (MQ=255)

                           cGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCAAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATc                                                                                                              <  2:17932/140‑1 (MQ=255)

                             gAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCaa                                                                                                            >  1:1225129/1‑140 (MQ=255)

                             gAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCaa                                                                                                            <  1:972611/140‑1 (MQ=255)

                               ctgACAGCAAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTCCTAACCACCCCTTCCTGCAGGTGACTGGTCACCACAAAGTGATCGGTAATGAACAGCTCCACGCCGGCGATTACGCCGACATCAAGa                                                                                                          <  2:50793/138‑1 (MQ=255)

                               aCGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGa                                                                                                          <  2:137084/140‑1 (MQ=255)

                                cGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGAc                                                                                                         <  1:192009/140‑1 (MQ=255)

                                cGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGAc                                                                                                         <  2:393198/140‑1 (MQ=255)

                                 gACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGATCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGAcc                                                                                                        <  2:594749/140‑1 (MQ=255)

                                  aCAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCa                                                                                                       <  1:1179682/140‑1 (MQ=255)

                                   cAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCaa                                                                                                      >  1:892462/1‑140 (MQ=255)

                                           cATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAAt                                                                                              <  1:235566/140‑1 (MQ=255)

                                                aaCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGc                                                                                         >  2:696206/1‑140 (MQ=255)

                                                aaCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGc                                                                                         >  1:554498/1‑140 (MQ=255)

                                                aaCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGc                                                                                         <  1:706666/140‑1 (MQ=255)

                                                aaCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGc                                                                                         >  1:318849/1‑140 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    >  1:372207/1‑140 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    >  1:345331/1‑140 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    >  1:213091/1‑140 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    >  1:524867/1‑140 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    >  1:190551/1‑140 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    <  2:318849/140‑1 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    >  2:253892/1‑140 (MQ=255)

                                                     cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCg                                                                                    >  2:1211382/1‑140 (MQ=255)

                                                      gcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCgc                                                                                   >  2:1212466/1‑140 (MQ=255)

                                                       cACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCgca                                                                                  >  1:1231605/1‑140 (MQ=255)

                                                       cACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCgca                                                                                  >  2:1177470/1‑140 (MQ=255)

                                                        aCCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCgcag                                                                                 >  1:852728/1‑140 (MQ=255)

                                                        aCCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCgcag                                                                                 <  2:471353/140‑1 (MQ=255)

                                                          cAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCgcagca                                                                               >  1:374921/1‑140 (MQ=255)

                                                           aaTTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGcagcag                                                                              <  2:775803/140‑1 (MQ=255)

                                                              tgctgcACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTa                                                                           >  2:315062/1‑140 (MQ=255)

                                                               gctgcACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTAc                                                                          <  2:1203829/140‑1 (MQ=255)

                                                               gctgcACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTAc                                                                          <  2:1225129/140‑1 (MQ=255)

                                                               gctgcACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTAc                                                                          <  2:374921/140‑1 (MQ=255)

                                                                  gcACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGa                                                                       <  2:372207/140‑1 (MQ=255)

                                                                    aCCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaa                                                                     <  1:1064406/140‑1 (MQ=255)

                                                                     ccGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaac                                                                    <  1:1064186/140‑1 (MQ=255)

                                                                      cGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaaca                                                                   <  1:1087884/140‑1 (MQ=255)

                                                                      cGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaaca                                                                   <  1:1212466/140‑1 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  2:889248/1‑140 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 <  2:15601/140‑1 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  1:1115953/1‑140 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  2:1254804/1‑140 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  1:1227863/1‑140 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  1:770836/1‑140 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  1:7472/1‑140 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  1:15601/1‑140 (MQ=255)

                                                                        aGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaa                                                                 >  1:639562/1‑140 (MQ=255)

                                                                          catcatGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAaacaaaca                                                               <  1:801390/140‑1 (MQ=255)

                                                                          catcatGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAaacaaaca                                                               <  2:1231605/140‑1 (MQ=255)

                                                                          catcatGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAaacaaaca                                                               <  2:363838/140‑1 (MQ=255)

                                                                                gCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCa                                                         >  2:1110318/1‑140 (MQ=255)

                                                                                   actaACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATAc                                                      <  1:315062/140‑1 (MQ=255)

                                                                                   actaACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATAc                                                      <  1:696206/140‑1 (MQ=255)

                                                                                    ctaACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATAcg                                                     >  1:418704/1‑140 (MQ=255)

                                                                                       accaccCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATAcgccg                                                  >  1:1246627/1‑140 (MQ=255)

                                                                                       accaccCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATAcgccg                                                  >  1:743197/1‑140 (MQ=255)

                                                                                           cccATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGaaacaaac                                                                >  1:540396/1‑122 (MQ=255)

                                                                                              aTTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATcc                                           >  2:223406/1‑140 (MQ=255)

                                                                                              aTTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATcc                                           >  1:471316/1‑140 (MQ=255)

                                                                                               ttCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATccc                                          >  1:786606/1‑140 (MQ=255)

                                                                                                  cTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCa                                       <  2:1227863/140‑1 (MQ=255)

                                                                                                     cAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAg                                    >  2:960749/1‑140 (MQ=255)

                                                                                                     cAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAg                                    >  2:912139/1‑140 (MQ=255)

                                                                                                     cAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAg                                    >  2:72476/1‑140 (MQ=255)

                                                                                                      aaaCGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGa                                   >  1:815499/1‑140 (MQ=255)

                                                                                                      aaaCGACTGGTCAGCACAAAGTGAACGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGa                                   >  1:667654/1‑140 (MQ=255)

                                                                                                       aaCGACTGGTCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGaa                                  <  2:691033/140‑1 (MQ=255)

                                                                                                                tCAGCACAAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGtt                         <  1:1177470/140‑1 (MQ=255)

                                                                                                                    cacaAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAg                     >  2:858171/1‑140 (MQ=255)

                                                                                                                    cacaAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAg                     >  1:227167/1‑140 (MQ=255)

                                                                                                                     acaAAGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGc                    <  2:345331/140‑1 (MQ=255)

                                                                                                                        aaGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGa                 <  2:220327/140‑1 (MQ=255)

                                                                                                                         aGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGAt                <  2:1074263/140‑1 (MQ=255)

                                                                                                                         aGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGAt                <  1:569433/140‑1 (MQ=255)

                                                                                                                         aGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGAt                >  1:1077522/1‑140 (MQ=255)

                                                                                                                         aGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGAt                <  1:889248/140‑1 (MQ=255)

                                                                                                                         aGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGAt                <  2:770836/140‑1 (MQ=255)

                                                                                                                         aGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGAt                >  1:263743/1‑140 (MQ=255)

                                                                                                                         aGTGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGAt                <  1:525254/140‑1 (MQ=255)

                                                                                                                           tGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTc              <  2:554498/140‑1 (MQ=255)

                                                                                                                           tGATCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTc              <  2:44781/140‑1 (MQ=255)

                                                                                                                              tCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACATTCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGt           >  1:735540/1‑140 (MQ=255)

                                                                                                                              tCGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGt           <  1:196938/140‑1 (MQ=255)

                                                                                                                               cGGTAATGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGTa          <  1:1211382/140‑1 (MQ=255)

                                                                                                                                     tGAACAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGTATTGATa    >  1:997115/1‑140 (MQ=255)

                                                                                                                                       aaCAGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGTATTGATAGt  >  1:169281/1‑140 (MQ=255)

GCCATCAGGCTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCCTGCGACCGCAGCAGCTACCGAAACAAACATATTCATACGCCGCGTATCCCGCAAAGAACGTGGCGTTAAAGCAGATTCCGTATTGATAGT  >  NC_000913/2981902‑2982176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A