Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F73 I1 R1 29 73.2 2528136 99.3% 2510439 139.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,477,059 C→A A121S (GCG→TCG)  fkpA ← peptidyl‑prolyl cis‑trans isomerase FkpA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,477,0590CA100.0% 329.8 / NA 90A121S (GCG→TCG) fkpApeptidyl‑prolyl cis‑trans isomerase FkpA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (34/56);  total (34/56)

TATCGCTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGCGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCTTT  >  NC_000913/3476924‑3477194
                                                                                                                                       |                                                                                                                                       
tATCGCTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCt                                                                                                                                     >  1:974674/1‑140 (MQ=255)
tATCGCTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCt                                                                                                                                     >  1:910150/1‑140 (MQ=255)
    gCTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCttttt                                                                                                                                 <  1:183816/140‑1 (MQ=255)
    gCTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCttttt                                                                                                                                 <  1:249635/140‑1 (MQ=255)
     cTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCttttt                                                                                                                                 <  1:607424/139‑1 (MQ=255)
     cTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCttttt                                                                                                                                 >  2:607424/1‑139 (MQ=255)
     cTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTc                                                                                                                                >  1:125123/1‑140 (MQ=255)
     cTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTc                                                                                                                                >  2:776462/1‑140 (MQ=255)
        tCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCAt                                                                                                                             >  1:1108086/1‑140 (MQ=255)
        tCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCAt                                                                                                                             >  1:1178477/1‑140 (MQ=255)
        tCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCAt                                                                                                                             >  2:817367/1‑140 (MQ=255)
         cTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATc                                                                                                                            <  1:425497/140‑1 (MQ=255)
              ggTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGc                                                                                                                       <  2:1108086/140‑1 (MQ=255)
              ggTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGc                                                                                                                       <  2:356048/140‑1 (MQ=255)
                tGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCt                                                                                                                     <  1:709443/140‑1 (MQ=255)
                  cTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGa                                                                                                                   >  2:140402/1‑140 (MQ=255)
                        cTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCagaa                                                                                                             <  1:776462/140‑1 (MQ=255)
                        cTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCagaa                                                                                                             <  1:976942/140‑1 (MQ=255)
                          ttACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCagaaga                                                                                                           >  2:709090/1‑140 (MQ=255)
                            aCCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACt                                                                                                         >  2:820211/1‑140 (MQ=255)
                             ccGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGTGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACtt                                                                                                        <  1:863262/140‑1 (MQ=255)
                             ccGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACtt                                                                                                        <  2:974674/140‑1 (MQ=255)
                                 cTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCGTCTTCGCCTGAGCAGAAGACTTCAcg                                                                                                    >  1:958161/1‑140 (MQ=255)
                                 cTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCAcg                                                                                                    >  1:1199755/1‑140 (MQ=255)
                                        tacCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTATGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCtt                                                                                             <  2:330525/140‑1 (MQ=255)
                                          ccTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCg                                                                                           <  1:648179/140‑1 (MQ=255)
                                           cTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGa                                                                                          >  1:196673/1‑140 (MQ=255)
                                            tGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGaa                                                                                         <  2:454792/140‑1 (MQ=255)
                                            tGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGaa                                                                                         <  2:1199755/140‑1 (MQ=255)
                                            tGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGaa                                                                                         <  2:1249088/140‑1 (MQ=255)
                                            tGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGaa                                                                                         <  1:442630/140‑1 (MQ=255)
                                              aTAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATg                                                                                       <  1:627922/140‑1 (MQ=255)
                                              aTAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATg                                                                                       <  1:153996/140‑1 (MQ=255)
                                              aTAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATg                                                                                       <  2:1065590/140‑1 (MQ=255)
                                               tAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCAcg                                                                                                    <  1:442331/126‑1 (MQ=255)
                                               tAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCAcg                                                                                                    >  2:442331/1‑126 (MQ=255)
                                               tAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGc                                                                                      >  1:646340/1‑140 (MQ=255)
                                               tAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGc                                                                                      >  1:350166/1‑140 (MQ=255)
                                                  accagaccagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTg                                                                                   >  1:325761/1‑140 (MQ=255)
                                                   ccagaccagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGt                                                                                  <  2:830657/140‑1 (MQ=255)
                                                    cagaccagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCg                                                                                           >  1:808256/1‑130 (MQ=255)
                                                    cagaccagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCg                                                                                           <  2:808256/130‑1 (MQ=255)
                                                       accagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTagag                                                                              <  2:453550/140‑1 (MQ=255)
                                                       accagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTagag                                                                              <  1:709090/140‑1 (MQ=255)
                                                       accagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTa                                                                                 >  2:1095785/1‑137 (MQ=255)
                                                       accagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTa                                                                                 <  1:1095785/137‑1 (MQ=255)
                                                        ccagTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGt                                                                             >  2:839565/1‑140 (MQ=255)
                                                            ttGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGt                                                                         >  2:736308/1‑140 (MQ=255)
                                                                 gagGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGAt                                                                    >  2:500420/1‑140 (MQ=255)
                                                                          acacCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTc                                                           <  2:325761/140‑1 (MQ=255)
                                                                            acCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCgg                                                         <  2:536838/140‑1 (MQ=255)
                                                                            acCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCgg                                                         <  1:1206943/140‑1 (MQ=255)
                                                                                 tctcTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCgg                                                         >  2:1149520/1‑135 (MQ=255)
                                                                                 tctcTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCgg                                                         <  1:1149520/135‑1 (MQ=255)
                                                                                 tctcTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGt                                                    <  1:263333/140‑1 (MQ=255)
                                                                                 tctcTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGt                                                    >  2:263333/1‑140 (MQ=255)
                                                                                      ttGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGct                                               >  2:137911/1‑140 (MQ=255)
                                                                                       tGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGctc                                              >  2:709943/1‑140 (MQ=255)
                                                                                         gCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCtt                                            <  2:196673/140‑1 (MQ=255)
                                                                                         gCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCtt                                            <  1:709943/140‑1 (MQ=255)
                                                                                              tttCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAg                                       <  1:31419/140‑1 (MQ=255)
                                                                                                   cgcgGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAAt                                  <  2:1178477/140‑1 (MQ=255)
                                                                                                   cgcgGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAAt                                  <  2:440661/140‑1 (MQ=255)
                                                                                                   cgcgGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAAt                                  <  1:817367/140‑1 (MQ=255)
                                                                                                   cgcgGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAAt                                  <  1:839565/140‑1 (MQ=255)
                                                                                                     cgGTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGc                                <  2:350166/140‑1 (MQ=255)
                                                                                                      ggTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCa                               <  1:906409/140‑1 (MQ=255)
                                                                                                      ggTACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCa                               <  2:745802/140‑1 (MQ=255)
                                                                                                        tACTCTTTACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATc                             <  1:500420/140‑1 (MQ=255)
                                                                                                             tttACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGaa                        <  1:98201/140‑1 (MQ=255)
                                                                                                             tttACCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGaa                        <  1:137911/140‑1 (MQ=255)
                                                                                                                aCCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAacac                     <  2:1263493/140‑1 (MQ=255)
                                                                                                                aCCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAacac                     <  2:444020/140‑1 (MQ=255)
                                                                                                                aCCTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAacac                     <  1:4650/140‑1 (MQ=255)
                                                                                                                  cTTTTGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCa                   >  2:990765/1‑140 (MQ=255)
                                                                                                                    tttGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGc                 >  1:1091925/1‑140 (MQ=255)
                                                                                                                     ttGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCg                <  1:736308/140‑1 (MQ=255)
                                                                                                                     ttGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCg                >  1:870516/1‑140 (MQ=255)
                                                                                                                      tGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGa               >  2:267064/1‑140 (MQ=255)
                                                                                                                      tGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGa               <  2:125123/140‑1 (MQ=255)
                                                                                                                      tGCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGa               >  2:1195953/1‑140 (MQ=255)
                                                                                                                       gCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGAt              >  1:542116/1‑140 (MQ=255)
                                                                                                                       gCTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGAt              <  1:140402/140‑1 (MQ=255)
                                                                                                                        cTTCGTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATc             <  2:209487/140‑1 (MQ=255)
                                                                                                                            gTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt         <  1:652801/140‑1 (MQ=255)
                                                                                                                            gTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt         <  2:1260951/140‑1 (MQ=255)
                                                                                                                            gTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt         <  1:1195953/140‑1 (MQ=255)
                                                                                                                            gTTATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCt         <  1:990765/140‑1 (MQ=255)
                                                                                                                              tATCAGCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGa       <  2:1091925/140‑1 (MQ=255)
                                                                                                                                   gCCGAGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCttt  >  1:539965/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
TATCGCTGTCTTTCGGTGCTTCGCCTTTACCGGCTTCTACTACCTGATAAACCAGACCAGTTGAAGAGGTTTTCACACCTTTCTCTTTGGCAAATTTCTCGCGGTACTCTTTACCTTTTGCTTCGTTATCAGCCGCGTCTTTTTCCATCTTCGCCTGAGCAGAAGACTTCACGCGAGCTTCGAATGCTTGTAGAGTCTGTTCGATCTCTTGGTCGGAGAGTTTGCTCTTATCAGCAAATGCATCCTGAACACCAGCGATCAGCTGATCTTT  >  NC_000913/3476924‑3477194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A