Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F73 I1 R1 29 73.2 2528136 99.3% 2510439 139.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,853,083 G→T intergenic (‑95/+35) ivbL ← / ← istR ilvBN operon leader peptide/small RNA IstR‑2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,853,0830GT100.0% 318.3 / NA 91intergenic (‑95/+35)ivbL/istRilvBN operon leader peptide/small RNA IstR‑2
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (57/34);  total (57/34)

GCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATAC  >  NC_000913/3852946‑3853205
                                                                                                                                         |                                                                                                                          
gcgcAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAgtgg                                                                                                                          >  1:275943/1‑140 (MQ=255)
           agtagtTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGtt                                                                                                               >  2:414144/1‑140 (MQ=255)
                ttttGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTa                                                                                                          <  2:289746/140‑1 (MQ=255)
                  ttGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACt                                                                                                        >  1:1200093/1‑140 (MQ=255)
                            cATGGAAGTAGTCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGa                                                                                              <  2:1204696/140‑1 (MQ=255)
                                    tagtCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACaaaa                                                                                      >  2:154297/1‑140 (MQ=255)
                                      gtCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACaaaaaa                                                                                    >  2:561560/1‑140 (MQ=255)
                                      gtCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACaaaaaa                                                                                    <  1:414144/140‑1 (MQ=255)
                                      gtCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACaaaaaa                                                                                    >  2:421604/1‑140 (MQ=255)
                                      gtCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACaaaaaa                                                                                    >  1:521529/1‑140 (MQ=255)
                                         aTTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAAccc                                                                                 >  1:252329/1‑140 (MQ=255)
                                             gggACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCccgcc                                                                             >  2:380216/1‑140 (MQ=255)
                                              ggACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCccgccg                                                                            >  1:23115/1‑140 (MQ=255)
                                                  cTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGc                                                                        <  2:549847/140‑1 (MQ=255)
                                                  cTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGc                                                                        <  1:614483/140‑1 (MQ=255)
                                                  cTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGc                                                                        <  2:275943/140‑1 (MQ=255)
                                                    tgttgGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGa                                                                      >  1:1086522/1‑140 (MQ=255)
                                                          ttttGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTc                                                                >  1:999142/1‑140 (MQ=255)
                                                            ttGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGt                                                              >  2:1092239/1‑140 (MQ=255)
                                                              gtgtTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCa                                                            <  1:154297/140‑1 (MQ=255)
                                                              gtgtTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCa                                                            >  2:192218/1‑140 (MQ=255)
                                                               tgtTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAg                                                           >  1:1195610/1‑140 (MQ=255)
                                                               tgtTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAg                                                           >  1:1138803/1‑140 (MQ=255)
                                                                      cAATATTTATACAAGCACAGCTTTACAGGGGAGAAAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTg                                                    <  2:1086522/140‑1 (MQ=255)
                                                                         tatTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCgg                                                 >  1:572631/1‑140 (MQ=255)
                                                                              ataCAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGt                                            <  2:394756/140‑1 (MQ=255)
                                                                              ataCAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGt                                            <  2:521529/140‑1 (MQ=255)
                                                                              ataCAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGt                                            >  2:754329/1‑140 (MQ=255)
                                                                              ataCAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGt                                            >  1:948785/1‑140 (MQ=255)
                                                                                   aGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCg                                       >  2:717051/1‑140 (MQ=255)
                                                                                    gCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCg                                       >  2:332795/1‑139 (MQ=255)
                                                                                    gCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCg                                       <  1:332795/139‑1 (MQ=255)
                                                                                    gCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGc                                      >  2:798874/1‑140 (MQ=255)
                                                                                    gCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGc                                      >  1:1051959/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTaa                                          <  1:849692/135‑1 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTaa                                          >  2:849692/1‑135 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  2:522517/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  2:697550/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  1:971440/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  1:891216/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  1:1051624/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  1:685489/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  1:464543/1‑140 (MQ=255)
                                                                                     cacaGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACGGAATTGCAGATAACAAAAACCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     <  2:891216/140‑1 (MQ=255)
                                                                                       caGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCaaa                                   <  1:421604/140‑1 (MQ=255)
                                                                                        aGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAg                                  <  2:999142/140‑1 (MQ=255)
                                                                                        aGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAg                                  <  1:522517/140‑1 (MQ=255)
                                                                                         gCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGc                                 <  1:1092239/140‑1 (MQ=255)
                                                                                          cTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGca                                >  1:348759/1‑140 (MQ=255)
                                                                                          cTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGca                                >  1:542611/1‑140 (MQ=255)
                                                                                          cTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGca                                >  2:825582/1‑140 (MQ=255)
                                                                                          cTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGca                                <  2:542611/140‑1 (MQ=255)
                                                                                            ttACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              <  2:572631/140‑1 (MQ=255)
                                                                                            ttACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              <  2:1138803/140‑1 (MQ=255)
                                                                                            ttACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              <  2:1195610/140‑1 (MQ=255)
                                                                                            ttACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              <  1:561560/140‑1 (MQ=255)
                                                                                            ttACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              <  1:1245552/140‑1 (MQ=255)
                                                                                              aCAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              <  2:1101111/138‑1 (MQ=255)
                                                                                              aCAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              >  1:1101111/1‑138 (MQ=255)
                                                                                               cAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTg                           >  1:80519/1‑140 (MQ=255)
                                                                                                  gggAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCaaa                                   <  2:883966/129‑1 (MQ=255)
                                                                                                  gggAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCaaa                                   >  1:883966/1‑129 (MQ=255)
                                                                                                  gggAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAg                                  <  2:1030344/130‑1 (MQ=255)
                                                                                                  gggAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAg                                  >  1:1030344/1‑130 (MQ=255)
                                                                                                  gggAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtat                        >  1:604951/1‑140 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     <  2:245570/125‑1 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCa                                     >  1:245570/1‑125 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              >  1:41844/1‑132 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGcaca                              <  2:41844/132‑1 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtatta                      >  2:754381/1‑140 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtatta                      >  1:325872/1‑140 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtatta                      >  1:845669/1‑140 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtatta                      >  1:331985/1‑140 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtatta                      >  1:332527/1‑140 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtatta                      >  1:624471/1‑140 (MQ=255)
                                                                                                    gagaCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGtatta                      >  1:615740/1‑140 (MQ=255)
                                                                                                       aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGca                                <  2:1065532/127‑1 (MQ=255)
                                                                                                       aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGca                                >  1:1065532/1‑127 (MQ=255)
                                                                                                       aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGt                   >  1:173157/1‑140 (MQ=255)
                                                                                                       aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGt                   >  2:763489/1‑140 (MQ=255)
                                                                                                       aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGt                   >  1:604425/1‑140 (MQ=255)
                                                                                                       aCAATGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGt                   >  2:726532/1‑140 (MQ=255)
                                                                                                         aaTGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCa                 >  1:770480/1‑140 (MQ=255)
                                                                                                           tGGAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAac               <  2:1200093/140‑1 (MQ=255)
                                                                                                            ggAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAaca              >  1:442547/1‑140 (MQ=255)
                                                                                                            ggAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAaca              >  2:343811/1‑140 (MQ=255)
                                                                                                            ggAAAATTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAaca              <  1:754329/140‑1 (MQ=255)
                                                                                                                aaTTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGa          >  2:365563/1‑140 (MQ=255)
                                                                                                                 aTTTTTCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGaa         <  1:380216/140‑1 (MQ=255)
                                                                                                                   ttttCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAATCCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAg       <  2:1068526/140‑1 (MQ=255)
                                                                                                                     ttCAGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGta     >  2:138760/1‑140 (MQ=255)
                                                                                                                        aGCAAGGGAAAATTGAGTGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATAc  <  2:604425/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                          
GCGCAGTTGGTAGTAGTTTTGCGTTGAGCATGGAAGTAGTCATTGGGGACCTTGTTGGTTTTGTGTTTAACAATATTTATACAAGCACAGCTTTACAGGGGAGACAATGGAAAATTTTTCAGCAAGGGAAAATTGAGGGGTTGATCACGTTTTGTACTGAATTGCAGATAACAAAAAACCCCGCCGGAGCGAGGTTTCGTCAGTCGCCTGCGGCTGGTAACCGCAAAGCACACTGTATTATGTCAACACTGAAAGTATAC  >  NC_000913/3852946‑3853205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A