Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A17 F73 I1 R1	29	73.2	2528136	99.3%	2510439	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,134,963	G→T	D377Y (GAC→TAC)	katG →	hydroperoxidase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,134,963	0	G	T	100.0%	225.2 / NA	65	D377Y (GAC→TAC)	katG	hydroperoxidase I
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (28/37); total (28/37)

AACCTGTTCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAAATCTCG  >  NC_000913/4134828‑4135096

aaCCTGTTCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGacctacct                                                                                                                                   >  2:81460/1‑140 (MQ=255)

aaCCTGTTCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGacctacct                                                                                                                                   >  1:1094378/1‑140 (MQ=255)

  ccTGTTCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGa                                                                                                                                 <  1:816384/140‑1 (MQ=255)

       tCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTg                                                                                                                            <  2:1051179/140‑1 (MQ=255)

       tCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTg                                                                                                                            <  2:557406/140‑1 (MQ=255)

         aaGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCg                                                                                                                          <  2:415529/140‑1 (MQ=255)

             aTGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGtttt                                                                                                                      >  1:1208644/1‑140 (MQ=255)

             aTGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGtttt                                                                                                                      >  1:186223/1‑140 (MQ=255)

                aGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGAt                                                                                                                   >  1:1141996/1‑140 (MQ=255)

                aGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGAt                                                                                                                   >  2:748442/1‑140 (MQ=255)

                aGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGAt                                                                                                                   >  1:800869/1‑140 (MQ=255)

                 gTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATc                                                                                                                  <  1:480102/140‑1 (MQ=255)

                  tGGGTACAGACCCGCAGCCCGGCTGGTGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATcc                                                                                                                 <  1:519166/140‑1 (MQ=255)

                  tGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATcc                                                                                                                 <  1:240950/140‑1 (MQ=255)

                  tGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATcc                                                                                                                 <  1:288987/140‑1 (MQ=255)

                     gTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGa                                                                                                              >  1:166568/1‑140 (MQ=255)

                     gTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGa                                                                                                              >  2:583733/1‑140 (MQ=255)

                     gTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGa                                                                                                              >  1:50192/1‑140 (MQ=255)

                      tACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAg                                                                                                             <  2:933239/140‑1 (MQ=255)

                      tACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAg                                                                                                             >  2:417267/1‑140 (MQ=255)

                      tACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAg                                                                                                             >  1:933239/1‑140 (MQ=255)

                      tACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAg                                                                                                             <  1:427429/140‑1 (MQ=255)

                       aCAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGt                                                                                                            <  2:166568/140‑1 (MQ=255)

                          gACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCg                                                                                                         >  1:634849/1‑140 (MQ=255)

                             ccGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCgaga                                                                                                      <  1:81460/140‑1 (MQ=255)

                               gCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGagaag                                                                                                    >  2:907528/1‑140 (MQ=255)

                               gCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGagaag                                                                                                    <  1:1006840/140‑1 (MQ=255)

                                cAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTACCCCGGATCCGTTTGATCCGTCGAAGAAACGTAGACCGACAATGCTGGAGACCTACCTGACGCTGCGCTTTGATCCTGAGTTCGagaagt                                                                                                   >  2:973739/1‑139 (MQ=255)

                                     cGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAtctct                                                                                              >  2:572116/1‑140 (MQ=255)

                                     cGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGAtctct                                                                                              >  2:1146302/1‑140 (MQ=255)

                                       gCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTGCCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCtcg                                                                                            <  2:1189262/140‑1 (MQ=255)

                                         tGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCtcgtc                                                                                          <  2:1165137/140‑1 (MQ=255)

                                           gcgcAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTcgtcgt                                                                                        <  1:973739/140‑1 (MQ=255)

                                                 tCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTc                                                                                  >  2:372821/1‑140 (MQ=255)

                                                           aGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGc                                                                        >  2:289419/1‑140 (MQ=255)

                                                           aGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGc                                                                        >  2:117330/1‑140 (MQ=255)

                                                                tAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCg                                                                   >  1:1092673/1‑140 (MQ=255)

                                                                       cccGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACg                                                            <  2:208356/139‑1 (MQ=255)

                                                                       aCCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACg                                                            <  1:1090515/140‑1 (MQ=255)

                                                                       aCCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACg                                                            <  2:634849/140‑1 (MQ=255)

                                                                       aCCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACg                                                            >  1:1130743/1‑140 (MQ=255)

                                                                                      ggATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTg                                             >  2:769078/1‑140 (MQ=255)

                                                                                       gATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGc                                            <  2:1094378/140‑1 (MQ=255)

                                                                                       gATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGc                                            >  2:1074182/1‑140 (MQ=255)

                                                                                       gATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGc                                            <  2:800869/140‑1 (MQ=255)

                                                                                        aTCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGcc                                           <  1:289419/140‑1 (MQ=255)

                                                                                        aTCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGcc                                           <  1:372821/140‑1 (MQ=255)

                                                                                        aTCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGcc                                           >  1:1105434/1‑140 (MQ=255)

                                                                                             tttGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGtt                                      >  1:796254/1‑140 (MQ=255)

                                                                                               tGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCa                                    <  1:583733/140‑1 (MQ=255)

                                                                                                 aTCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCaaa                                  <  1:764183/140‑1 (MQ=255)

                                                                                                    cGTCGAAGACACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTg                               <  2:644868/140‑1 (MQ=255)

                                                                                                    cGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTg                               <  1:6846/140‑1 (MQ=255)

                                                                                                    cGTCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTg                               <  1:572116/140‑1 (MQ=255)

                                                                                                      tCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAc                             >  2:290158/1‑140 (MQ=255)

                                                                                                      tCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAc                             >  2:124696/1‑140 (MQ=255)

                                                                                                      tCGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGAc                             >  2:1230771/1‑140 (MQ=255)

                                                                                                       cGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACg                            <  2:186223/140‑1 (MQ=255)

                                                                                                       cGAAGAAACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACg                            <  2:1208644/140‑1 (MQ=255)

                                                                                                         aagaaACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGca                          <  2:1225519/140‑1 (MQ=255)

                                                                                                         aagaaACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGca                          <  2:1141996/140‑1 (MQ=255)

                                                                                                         aagaaACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGca                          <  1:748442/140‑1 (MQ=255)

                                                                                                          agaaACGTAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGcac                         <  2:1105434/140‑1 (MQ=255)

                                                                                                                 tAAACCGACAATGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGata                  <  2:982550/140‑1 (MQ=255)

                                                                                                                          aaTGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGa         >  2:691948/1‑140 (MQ=255)

                                                                                                                            tGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGaaa       <  1:691948/140‑1 (MQ=255)

                                                                                                                            tGCTGGTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGaaa       <  1:417267/140‑1 (MQ=255)

                                                                                                                                 gTGACCTACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAAATCTCg  >  2:1086844/1‑140 (MQ=255)

AACCTGTTCAAGTATGAGTGGGTACAGACCCGCAGCCCGGCTGGCGCAATCCAGTTCGAAGCGGTAGACGCACCGGAAATTATCCCGGATCCGTTTGATCCGTCGAAGAAACGTAAACCGACAATGCTGGTGACCGACCTGACGCTGCGTTTTGATCCTGAGTTCGAGAAGATCTCTCGTCGTTTCCTCAACGATCCGCAGGCGTTCAACGAAGCCTTTGCCCGTGCCTGGTTCAAACTGACGCACAGGGATATGGGGCCGAAATCTCG  >  NC_000913/4134828‑4135096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A