Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F73 I1 R1 29 73.2 2528136 99.3% 2510439 139.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,554,906 G→T E111* (GAG→TAG)  uxuR → DNA‑binding transcriptional repressor UxuR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,554,9060GT100.0% 222.0 / NA 62E111* (GAG→TAG) uxuRDNA‑binding transcriptional repressor UxuR
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (36/26);  total (36/26)

GCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATT  >  NC_000913/4554772‑4555040
                                                                                                                                      |                                                                                                                                      
gCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGttt                                                                                                                                   >  1:823330/1‑140 (MQ=255)
gCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGttt                                                                                                                                   >  1:412222/1‑140 (MQ=255)
 cccgggTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTg                                                                                                                                  <  1:880226/137‑1 (MQ=255)
  cGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGc                                                                                                                                 <  2:951387/140‑1 (MQ=255)
    gggTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCg                                                                                                                               <  2:403590/140‑1 (MQ=255)
    gggTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCg                                                                                                                               <  1:189034/140‑1 (MQ=255)
       tGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCtt                                                                                                                            >  1:681174/1‑140 (MQ=255)
          cGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGc                                                                                                                         >  2:838309/1‑140 (MQ=255)
               tCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCt                                                                                                                    <  1:176450/140‑1 (MQ=255)
                   tGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTAccc                                                                                                                <  1:1240980/140‑1 (MQ=255)
                       cTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGa                                                                                                            >  1:1240414/1‑140 (MQ=255)
                       cTTGATAACTCAGGCAGCCAAAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGa                                                                                                            >  2:1247086/1‑140 (MQ=255)
                        ttGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGTCGCTTTGCAGGCTACCCGCGaa                                                                                                           >  1:333536/1‑140 (MQ=255)
                          gATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGa                                                                                                         <  2:681174/140‑1 (MQ=255)
                               cTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCg                                                                                                    >  2:797887/1‑140 (MQ=255)
                               cTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCg                                                                                                    >  2:1109002/1‑140 (MQ=255)
                                  aGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCa                                                                                                 >  2:173056/1‑140 (MQ=255)
                                    gCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCaaa                                                                                               <  2:823330/140‑1 (MQ=255)
                                    gCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCaaa                                                                                               <  1:887928/140‑1 (MQ=255)
                                        ccAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGc                                                                                           >  1:988407/1‑140 (MQ=255)
                                        ccAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGc                                                                                           >  2:675191/1‑140 (MQ=255)
                                        ccAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGc                                                                                           >  2:685134/1‑140 (MQ=255)
                                        ccAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGc                                                                                           <  1:1043522/140‑1 (MQ=255)
                                         cAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCg                                                                                          >  2:182839/1‑140 (MQ=255)
                                         cAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCg                                                                                          <  1:173056/140‑1 (MQ=255)
                                              cacaGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAgg                                                                                     <  2:281727/140‑1 (MQ=255)
                                                  gacagTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCAtt                                                                                 >  2:38343/1‑140 (MQ=255)
                                                  gacagTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCAtt                                                                                 <  1:1102583/140‑1 (MQ=255)
                                                  gacagTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCAtt                                                                                 <  1:252339/140‑1 (MQ=255)
                                                  gacagTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCAtt                                                                                 >  1:176094/1‑140 (MQ=255)
                                                   acagTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTg                                                                                >  1:384929/1‑140 (MQ=255)
                                                    cagTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGc                                                                               <  1:675191/140‑1 (MQ=255)
                                                      gTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCaa                                                                             >  1:812450/1‑140 (MQ=255)
                                                       tCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGGGTCAGGCATTGCAAc                                                                            >  2:1159231/1‑140 (MQ=255)
                                                       tCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAAc                                                                            >  1:520406/1‑140 (MQ=255)
                                                       tCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAAc                                                                            >  2:1134664/1‑140 (MQ=255)
                                                            aTGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGaa                                                                       <  2:1240414/140‑1 (MQ=255)
                                                                     tCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTTCCCGCGAAGATATCGTCAAAATGCGAAAGGCATTGCAACTGGAAGAGCGTGaa                                                              <  2:344634/140‑1 (MQ=255)
                                                                     tCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGGGTCAGGCATTGCAACTGGAAGAGCGTGaa                                                              <  1:1159231/140‑1 (MQ=255)
                                                                     tCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGaa                                                              <  1:838309/140‑1 (MQ=255)
                                                                      cTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAAc                                                             >  1:789381/1‑140 (MQ=255)
                                                                       tGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACt                                                            <  1:746795/140‑1 (MQ=255)
                                                                              aTGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTcc                                                     >  1:1035108/1‑140 (MQ=255)
                                                                               tGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCa                                                    >  1:182599/1‑140 (MQ=255)
                                                                               tGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCa                                                    <  1:797887/140‑1 (MQ=255)
                                                                                 ccGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGt                                                  >  2:344025/1‑140 (MQ=255)
                                                                                           tGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGgca                                        >  1:814844/1‑140 (MQ=255)
                                                                                                       ggCGCGGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCg                            >  2:437230/1‑140 (MQ=255)
                                                                                                          gcgGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTg                         <  1:947936/140‑1 (MQ=255)
                                                                                                           cgGCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGa                        <  2:253082/140‑1 (MQ=255)
                                                                                                            ggCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGTAGCAGCGAAAGCGGTGAc                       >  1:779199/1‑140 (MQ=255)
                                                                                                            ggCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGAc                       >  2:656265/1‑140 (MQ=255)
                                                                                                            ggCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGAc                       >  1:738588/1‑140 (MQ=255)
                                                                                                            ggCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGAc                       >  2:1022179/1‑140 (MQ=255)
                                                                                                            ggCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGAc                       >  2:635888/1‑140 (MQ=255)
                                                                                                            ggCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGAc                       >  2:544915/1‑140 (MQ=255)
                                                                                                            ggCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGAAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCAATACAACTGGAAAAGAGTGAACTGGCTTCCAGTGCGCCGGACAGCAACGAAAGCGGTgtt                       >  2:592546/1‑138 (MQ=255)
                                                                                                             gCAGTTATTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACa                      <  2:384929/140‑1 (MQ=255)
                                                                                                                   aTTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGt                >  2:814007/1‑140 (MQ=255)
                                                                                                                   aTTGGAGAGCAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGt                <  2:300514/140‑1 (MQ=255)
                                                                                                                         gagCAACATCGCCTAGTTTGTCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCAtc          <  2:333536/140‑1 (MQ=255)
                                                                                                                            cAACATCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCg       >  1:147655/1‑140 (MQ=255)
                                                                                                                                 tCGCCTAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTAtt  >  1:1164408/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                      
GCCGGGGTGCCGGTATCTATGTTCTTGATAACTCAGGCAGCCAGAACACAGACAGTCCGGATGCCAACGTCTGCAACGATGCCGGTCCTTTTGAGCTGTTACAGGCGCGGCAGTTATTGGAGAGCAACATCGCCGAGTTTGCCGCTTTGCAGGCTACCCGCGAAGATATCGTCAAAATGCGTCAGGCATTGCAACTGGAAGAGCGTGAACTGGCTTCCAGTGCGCCGGGCAGCAGCGAAAGCGGTGACATGCAGTTCCATCTCGCTATT  >  NC_000913/4554772‑4555040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A