Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F73 I1 R1	23	178.8	6243766	99.3%	6200059	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,438,942	C→A	P107P (CCG→CCT)	ytfJ ←	protein YtfJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,438,942	0	C	A	100.0%	708.6 / NA	195	P107P (CCG→CCT)	ytfJ	protein YtfJ
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (91/104); total (91/104)

Only 100 of 197 total aligned reads displayed.

GCACCACTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAC  >  NC_000913/4438806‑4439076

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGaa                                                                                                                                    >  1:1280832/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  2:325013/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  2:578274/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  1:3120901/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  2:1440516/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  1:2286664/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  2:510964/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  1:1674224/1‑140 (MQ=255)

 caccacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGaa                                                                                                                                    >  2:2762497/1‑140 (MQ=255)

    cacTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATcg                                                                                                                                 <  2:2953768/140‑1 (MQ=255)

      cTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATcgcg                                                                                                                               >  2:326114/1‑140 (MQ=255)

      cTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATcgcg                                                                                                                               >  1:2942050/1‑140 (MQ=255)

         cAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGcgtcg                                                                                                                            <  2:2891589/140‑1 (MQ=255)

          aGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGcgtcgt                                                                                                                           <  1:2699007/140‑1 (MQ=255)

          aGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGcgtcgt                                                                                                                           <  2:1162888/140‑1 (MQ=255)

          aGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGcgtcgt                                                                                                                           <  2:1652016/140‑1 (MQ=255)

          aGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGcgtcgt                                                                                                                           <  1:510964/140‑1 (MQ=255)

           gCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCgtcgtc                                                                                                                          <  2:2391558/140‑1 (MQ=255)

            cGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGtcgtcg                                                                                                                         >  1:290600/1‑140 (MQ=255)

            cGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGtcgtcg                                                                                                                         <  2:106385/140‑1 (MQ=255)

              gAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGgt                                                                                                                       <  2:1674224/140‑1 (MQ=255)

                 cTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGtt                                                                                                                    <  1:1909030/140‑1 (MQ=255)

                 cTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGtt                                                                                                                    >  2:2922027/1‑140 (MQ=255)

                 cTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGtt                                                                                                                    >  2:1082634/1‑140 (MQ=255)

                 cTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGtt                                                                                                                    >  2:1909030/1‑140 (MQ=255)

                      ttcATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACaa                                                                                                               <  2:1230704/140‑1 (MQ=255)

                      ttcATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACaa                                                                                                               <  1:1855538/140‑1 (MQ=255)

                        cATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGcgtcg                                                                                                                            >  1:165159/1‑125 (MQ=255)

                          tCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAAtggt                                                                                                           >  1:1947888/1‑140 (MQ=255)

                            cAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAAtggtgg                                                                                                         <  2:3114578/140‑1 (MQ=255)

                            cAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAAtggtgg                                                                                                         <  1:1630862/140‑1 (MQ=255)

                            cAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAAtggtgg                                                                                                         <  2:806453/140‑1 (MQ=255)

                            cAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAAtggtgg                                                                                                         <  2:2271978/140‑1 (MQ=255)

                            cAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAAtggtgg                                                                                                         <  2:2835741/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  1:1528474/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  1:956847/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  2:1119172/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  1:344911/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  2:1213597/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  2:750157/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  2:1947888/140‑1 (MQ=255)

                                tGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  1:2107826/140‑1 (MQ=255)

                                    aGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTgg                                                                                                 >  1:766563/1‑140 (MQ=255)

                                            aGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATggtggtggt                                                                                                     <  1:2744652/128‑1 (MQ=255)

                                            aGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATc                                                                                         >  1:2449656/1‑140 (MQ=255)

                                            aGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATc                                                                                         >  1:2788905/1‑140 (MQ=255)

                                            aGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATc                                                                                         >  1:518863/1‑140 (MQ=255)

                                                cgACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGc                                                                                     >  2:1607424/1‑140 (MQ=255)

                                                   cGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGt                                                                                  <  2:252993/140‑1 (MQ=255)

                                                   cGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGt                                                                                  >  2:164658/1‑140 (MQ=255)

                                                   cGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGt                                                                                  <  1:578274/140‑1 (MQ=255)

                                                         tGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTc                                                                            <  1:405461/140‑1 (MQ=255)

                                                          gCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCg                                                                           <  1:1607424/140‑1 (MQ=255)

                                                                   aaTAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTaa                                                                  <  2:2728829/140‑1 (MQ=255)

                                                                   aaTAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTaa                                                                  <  2:1896670/140‑1 (MQ=255)

                                                                     tAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATc                                                                >  1:6731/1‑140 (MQ=255)

                                                                     tAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATc                                                                >  2:1808225/1‑140 (MQ=255)

                                                                            cGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCaa                                                         >  1:2636709/1‑140 (MQ=255)

                                                                             gACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAAt                                                        >  2:1483940/1‑140 (MQ=255)

                                                                                 aGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGc                                                    >  2:1619320/1‑140 (MQ=255)

                                                                                      tAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTcgc                                               >  1:1414556/1‑140 (MQ=255)

                                                                                        aaGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGt                                             >  2:1322866/1‑140 (MQ=255)

                                                                                              tttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtct                                       >  2:717456/1‑140 (MQ=255)

                                                                                              tttATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtct                                       >  2:919996/1‑140 (MQ=255)

                                                                                               ttattaCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTtctc                                      <  1:717456/140‑1 (MQ=255)

                                                                                                    aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg                                 <  2:342041/140‑1 (MQ=255)

                                                                                                    aCTCTCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTg                                 >  1:1045795/1‑140 (MQ=255)

                                                                                                     ctctCCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGc                                >  2:2598227/1‑140 (MQ=255)

                                                                                                      tctcCAGACTGCTGCGCACAAACATCCCTGATCCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCa                               <  1:2014385/140‑1 (MQ=255)

                                                                                                      tctcCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCa                               <  2:210/140‑1 (MQ=255)

                                                                                                        tcCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCaga                             >  2:2511736/1‑140 (MQ=255)

                                                                                                        tcCAGACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCaga                             >  1:2333567/1‑140 (MQ=255)

                                                                                                            gACTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTg                         >  1:3050253/1‑140 (MQ=255)

                                                                                                             aCTGCTGCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGc                        <  1:1483940/140‑1 (MQ=255)

                                                                                                              ctgctgCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg                       <  2:1266843/140‑1 (MQ=255)

                                                                                                              ctgctgCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg                       <  1:844258/140‑1 (MQ=255)

                                                                                                              ctgctgCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg                       <  1:306518/140‑1 (MQ=255)

                                                                                                              ctgctgCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg                       <  2:2019714/140‑1 (MQ=255)

                                                                                                              ctgctgCGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCCTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCg                       <  2:2449656/140‑1 (MQ=255)

                                                                                                               tgctgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGa                      <  1:912234/140‑1 (MQ=255)

                                                                                                                gctgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCATTCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc                     <  1:1736920/140‑1 (MQ=255)

                                                                                                                gctgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc                     <  2:845308/140‑1 (MQ=255)

                                                                                                                gctgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAc                     <  1:1808225/140‑1 (MQ=255)

                                                                                                                gctgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCACTTTTGCAGAGGTGCGAc                     <  1:1440516/140‑1 (MQ=255)

                                                                                                                 ctgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc                    >  1:2345755/1‑140 (MQ=255)

                                                                                                                 ctgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGAcc                    >  1:1210655/1‑140 (MQ=255)

                                                                                                                  tgcGCACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCa                   >  2:438048/1‑140 (MQ=255)

                                                                                                                     gcACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa                <  1:1073511/140‑1 (MQ=255)

                                                                                                                     gcACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa                <  2:2639041/140‑1 (MQ=255)

                                                                                                                     gcACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa                <  2:1995815/140‑1 (MQ=255)

                                                                                                                     gcACAAACATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCa                <  1:2514354/140‑1 (MQ=255)

                                                                                                                          aaCATCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATg           <  1:995281/140‑1 (MQ=255)

                                                                                                                              tCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGc       >  1:1694419/1‑140 (MQ=255)

                                                                                                                              tCCCTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGc       <  2:992711/140‑1 (MQ=255)

                                                                                                                               cccTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCa      <  1:438048/140‑1 (MQ=255)

                                                                                                                                ccTGAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAg     <  2:2345755/140‑1 (MQ=255)

                                                                                                                                   gAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTg        >  2:2558957/1‑134 (MQ=255)

                                                                                                                                   gAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTg        <  1:2558957/134‑1 (MQ=255)

                                                                                                                                   gAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAc  >  2:461050/1‑140 (MQ=255)

                                                                                                                                   gAACCAGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAc  >  1:131253/1‑140 (MQ=255)

GCACCACTACAGCGGAACTTTCTTCATCCAGCTGCCAGGCACCGAGCGCGACGCCATTGCTATCGACAATAAACTGCGACCAGGGATAAAGCTTTTTATTACTCTCCAGACTGCTGCGCACAAACATCCCTGAACCCGGAATCGCGTCGTCGGTGTTAACAATGGTGGTGGTCTGGTAACGATCGTGCGGTAACTTCGCTGATTTAATCGCTTCAATCAGCGTCGCGTTTTTCTCTTTTGCAGAGGTGCGACCAGCAATATGTTGCAGTAC  >  NC_000913/4438806‑4439076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A