Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F73 I1 R1	26	148.5	5206078	99.3%	5169635	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,336,604	A→C	I67S (ATC→AGC)	ibaG ←	acid stress protein IbaG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,336,604	0	A	C	98.3%	412.7 / ‑2.9	116	I67S (ATC→AGC)	ibaG	acid stress protein IbaG
Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (46/68); minor base T (1/1); total (47/69)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.16e-01

Only 100 of 118 total aligned reads displayed.

GGCCCCTGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGATCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGG  >  NC_000913/3336469‑3336739

ggCCCCTGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGa                                                                                                                                     <  1:986530/140‑1 (MQ=255)

ggCCCCTGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGa                                                                                                                                     <  2:596793/140‑1 (MQ=255)

ggCCCCTGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGa                                                                                                                                     >  2:2445596/1‑140 (MQ=255)

 gCCCCTGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGac                                                                                                                                    >  1:210175/1‑140 (MQ=255)

     cTGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAg                                                                                                                                <  2:1658306/140‑1 (MQ=255)

      tGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGc                                                                                                                               >  1:885564/1‑140 (MQ=255)

      tGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGc                                                                                                                               >  2:188193/1‑140 (MQ=255)

      tGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGc                                                                                                                               >  1:1790606/1‑140 (MQ=255)

       gAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGaca                                                                                                                                   >  1:2147862/1‑135 (MQ=255)

       gAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGaca                                                                                                                                   <  2:2147862/135‑1 (MQ=255)

       gAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCa                                                                                                                              <  2:1292482/140‑1 (MQ=255)

       gAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCa                                                                                                                              <  1:1855167/140‑1 (MQ=255)

        aaCACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGTTCGACACAGCAt                                                                                                                             >  1:438553/1‑140 (MQ=255)

        aaCACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCAt                                                                                                                             <  2:1522167/140‑1 (MQ=255)

        aaCACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCAt                                                                                                                             >  2:1247417/1‑140 (MQ=255)

             gAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGACGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATg                                                                                                                        >  2:2439869/1‑140 (MQ=255)

              aaaTTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGc                                                                                                                       >  1:2348497/1‑140 (MQ=255)

                  ttATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCGGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTGTACGCTTTGCTCGACACAGCATGAATGCGGtt                                                                                                                   <  1:282270/140‑1 (MQ=255)

                  ttATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGtt                                                                                                                   <  2:646542/140‑1 (MQ=255)

                  ttATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGtt                                                                                                                   <  1:205981/140‑1 (MQ=255)

                  ttATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGtt                                                                                                                   <  1:969440/140‑1 (MQ=255)

                  ttATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGtt                                                                                                                   <  1:1247417/140‑1 (MQ=255)

                    aTCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTAt                                                                                                                 <  2:721429/140‑1 (MQ=255)

                    aTCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTAt                                                                                                                 >  2:1342621/1‑140 (MQ=255)

                      ccATTTAGTTTGTTCTGAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               <  2:717089/140‑1 (MQ=255)

                      ccATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               <  1:1862577/140‑1 (MQ=255)

                      ccATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               <  1:311993/140‑1 (MQ=255)

                      ccATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               <  2:885564/140‑1 (MQ=255)

                      ccATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               <  2:860859/140‑1 (MQ=255)

                      ccATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               <  1:1996971/140‑1 (MQ=255)

                         tttAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               >  2:703978/1‑137 (MQ=255)

                         tttAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATcc                                                                                                               <  1:703978/137‑1 (MQ=255)

                         tttAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCa                                                                                                            <  1:971685/140‑1 (MQ=255)

                         tttAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCa                                                                                                            <  2:1466375/140‑1 (MQ=255)

                         tttAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCa                                                                                                            <  2:2423751/140‑1 (MQ=255)

                         tttAGTTTGTTCTCAGTTAACAACTCATATCCCCTACCGGCGAATCACCCATAGATCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCa                                                                                                            <  2:946876/140‑1 (MQ=255)

                          ttAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCaa                                                                                                           <  1:1342621/140‑1 (MQ=255)

                                 gTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTc                                                                                                    <  2:607334/140‑1 (MQ=255)

                                  ttCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGTAATATATTcc                                                                                                   <  2:764905/140‑1 (MQ=255)

                                   tctcAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCa                                                                                                  >  2:1702855/1‑140 (MQ=255)

                                       aGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATc                                                                                                                <  1:339872/122‑1 (MQ=255)

                                       aGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATc                                                                                                                >  2:339872/1‑122 (MQ=255)

                                       aGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAg                                                                                              <  2:210097/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  2:210175/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  1:1867540/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  1:1210890/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  2:936428/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  2:2506610/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  1:1404904/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  1:2371705/140‑1 (MQ=255)

                                        gTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  1:548294/140‑1 (MQ=255)

                                        gTTAACAATTCACATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGc                                                                                             <  1:1311036/140‑1 (MQ=255)

                                         ttAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCg                                                                                            <  2:636847/140‑1 (MQ=255)

                                          tAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCgg                                                                                           <  1:2567782/140‑1 (MQ=255)

                                            aCAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGAc                                                                                         >  2:1643237/1‑140 (MQ=255)

                                                   atatCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGAc                                                                                  >  2:1333892/1‑140 (MQ=255)

                                                     atCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCg                                                                                >  1:1287620/1‑140 (MQ=255)

                                                     atCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCg                                                                                >  1:990590/1‑140 (MQ=255)

                                                        cGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCg                                                                                            >  1:2589554/1‑125 (MQ=255)

                                                        cGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCg                                                                                            <  2:2589554/125‑1 (MQ=255)

                                                          cTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCg                                                                                            <  2:2558737/123‑1 (MQ=255)

                                                          cTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCg                                                                                            >  1:2558737/1‑123 (MQ=255)

                                                          cTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTctgc                                                                           >  1:924467/1‑140 (MQ=255)

                                                          cTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTctgc                                                                           >  2:817945/1‑140 (MQ=255)

                                                          cTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTctgc                                                                           >  2:286894/1‑140 (MQ=255)

                                                          cTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTctgc                                                                           >  1:82217/1‑140 (MQ=255)

                                                           tACCGGCGAATCGGCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTctgct                                                                          <  2:1020402/140‑1 (MQ=255)

                                                                gCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGtttt                                                                     <  2:201316/140‑1 (MQ=255)

                                                                 cGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGttttt                                                                    <  2:2580311/140‑1 (MQ=255)

                                                                 cGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGttttt                                                                    >  1:1418191/1‑140 (MQ=255)

                                                                     tCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAAc                                                                <  1:2043779/140‑1 (MQ=255)

                                                                     tCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAAc                                                                <  2:539535/140‑1 (MQ=255)

                                                                       gCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAAccc                                                              >  2:1526779/1‑140 (MQ=255)

                                                                             aGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCa                                                        <  1:817945/140‑1 (MQ=255)

                                                                             aGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCa                                                        <  2:924467/140‑1 (MQ=255)

                                                                               cTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATg                                                      <  1:2445596/140‑1 (MQ=255)

                                                                                 cAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGcc                                                    <  1:22035/140‑1 (MQ=255)

                                                                                  aaaaGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCg                                                   >  1:2079004/1‑140 (MQ=255)

                                                                                  aaaaGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCg                                                   >  1:1416716/1‑140 (MQ=255)

                                                                                      gCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCaa                                               <  2:1479976/140‑1 (MQ=255)

                                                                                         gTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAaaca                                            >  2:219492/1‑140 (MQ=255)

                                                                                              gTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCa                                       <  2:2348497/140‑1 (MQ=255)

                                                                                                  gCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCa                                   <  2:1287620/140‑1 (MQ=255)

                                                                                                        gcgcgcCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCaa                             <  1:1226957/140‑1 (MQ=255)

                                                                                                        gcgcgcCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCaa                             <  1:1526779/140‑1 (MQ=255)

                                                                                                        gcgcgcCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCaa                             <  2:2395244/140‑1 (MQ=255)

                                                                                                        gcgcgcCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCaa                             <  1:2439869/140‑1 (MQ=255)

                                                                                                         cgcgcCCACTCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAAt                            >  1:1915472/1‑140 (MQ=255)

                                                                                                                  tCCGCAGGGGTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGaaa                   >  1:2278038/1‑140 (MQ=255)

                                                                                                                           gTATACGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGcc          <  2:1416716/140‑1 (MQ=255)

                                                                                                                            tataCGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCa         >  1:683349/1‑140 (MQ=255)

                                                                                                                            tataCGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCa         >  1:1224286/1‑140 (MQ=255)

                                                                                                                            tataCGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCa         >  2:899481/1‑140 (MQ=255)

                                                                                                                            tataCGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCa         >  2:2212652/1‑140 (MQ=255)

                                                                                                                            tataCGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCa         >  1:412740/1‑140 (MQ=255)

                                                                                                                              taCGCTTTGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGC‑GACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCg      >  2:1648125/1‑140 (MQ=255)

                                                                                                                                   tttGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCgg  >  2:1489514/1‑140 (MQ=255)

                                                                                                                                   tttGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCg   >  1:232760/1‑139 (MQ=255)

                                                                                                                                    ttGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGcc          >  2:148736/1‑131 (MQ=255)

                                                                                                                                    ttGCTCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGcc          <  1:148736/131‑1 (MQ=255)

GGCCCCTGAACACGAAATTTATCCATTTAGTTTGTTCTCAGTTAACAATTCATATCCGCTACCGGCGAATCGCCCATAGCTCAAAAGCCGTTCAGTTTGCGATCGCGCGCCCACTCCGCAGGGGTATACGCTTTGATCGACACAGCATGAATGCGGTTATCCGCAATATATTCCATCAGCGGACCATAGACCGTCTGCTGTTTTTTAACCCGACTCATGCCGTCAAACAACTCACCCACGGCAATAACCTGAAAGTGGCTGCCATCGCCGG  >  NC_000913/3336469‑3336739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A