Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F73 I1 R1	33	77.0	2636344	99.1%	2612616	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,422,759	C→A	N108K (AAC→AAA)	yhdZ →	putative ABC transporter ATP‑binding subunit YhdZ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,422,759	0	C	A	100.0%	282.6 / NA	80	N108K (AAC→AAA)	yhdZ	putative ABC transporter ATP‑binding subunit YhdZ
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (44/36); total (44/36)

ACATCAACAGGGACGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAACTGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCAGGTGGTCAGCAGC  >  NC_000913/3422624‑3422895

aCATCAACAGGGACGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTa                                                                                                                                      >  1:521808/1‑140 (MQ=255)

 cATCAACAGGGACGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTAc                                                                                                                                     <  1:656452/140‑1 (MQ=255)

 cATCAACAGGGACGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTAc                                                                                                                                     >  1:682377/1‑140 (MQ=255)

       cAGGGACGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGc                                                                                                                               <  2:1132579/140‑1 (MQ=255)

       cAGGGACGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGc                                                                                                                               <  1:1239929/140‑1 (MQ=255)

            aCGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCa                                                                                                                              <  2:1088009/136‑1 (MQ=255)

            aCGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCa                                                                                                                              >  1:1088009/1‑136 (MQ=255)

             cGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGAt                                                                                                                         <  2:1187034/140‑1 (MQ=255)

             cGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGAt                                                                                                                         <  1:1204554/140‑1 (MQ=255)

               gATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGAttt                                                                                                                       <  2:306207/140‑1 (MQ=255)

                aTCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTg                                                                                                                      <  1:146389/140‑1 (MQ=255)

                    tGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTa                                                                                                                  >  1:737767/1‑140 (MQ=255)

                    tGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTa                                                                                                                  >  1:378752/1‑140 (MQ=255)

                    tGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTa                                                                                                                  <  1:1138902/140‑1 (MQ=255)

                    tGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTa                                                                                                                  >  2:1125088/1‑140 (MQ=255)

                    tGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTa                                                                                                                  >  2:162105/1‑140 (MQ=255)

                      gTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACg                                                                                                                >  2:1196880/1‑140 (MQ=255)

                      gTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACg                                                                                                                >  2:773138/1‑140 (MQ=255)

                      gTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACg                                                                                                                >  1:542871/1‑140 (MQ=255)

                         gATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCAc                                                                                                                             >  1:326966/1‑124 (MQ=255)

                         gATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCAc                                                                                                                             <  2:326966/124‑1 (MQ=255)

                          aTGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACTCAAg                                                                                                            <  1:951502/140‑1 (MQ=255)

                          aTGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAg                                                                                                            <  2:193298/140‑1 (MQ=255)

                          aTGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAg                                                                                                            >  2:268231/1‑140 (MQ=255)

                          aTGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAg                                                                                                            >  1:379795/1‑140 (MQ=255)

                          aTGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAg                                                                                                            <  2:737767/140‑1 (MQ=255)

                          aTGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAg                                                                                                            <  1:100142/140‑1 (MQ=255)

                            ggCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGAt                                                                                                          >  1:686902/1‑140 (MQ=255)

                            ggCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGAt                                                                                                          >  2:4411/1‑140 (MQ=255)

                            ggCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGAt                                                                                                          <  2:943835/140‑1 (MQ=255)

                            ggCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGAt                                                                                                          <  1:1015570/140‑1 (MQ=255)

                            ggCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAATGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAg                                                                                                            >  1:721520/1‑138 (MQ=255)

                            ggCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAATGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAg                                                                                                            <  2:721520/138‑1 (MQ=255)

                                  gAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTaa                                                                                                    <  2:379795/140‑1 (MQ=255)

                                      ttAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTaaaaaa                                                                                                <  2:1040617/140‑1 (MQ=255)

                                       tAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTaagaaag                                                                                               <  2:682377/140‑1 (MQ=255)

                                           gAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGc                                                                                           <  2:698430/140‑1 (MQ=255)

                                              gATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGa                                                                                        <  1:520705/140‑1 (MQ=255)

                                              gATATCCGCAATATTAAGCGCGTCAGGCAGGAAGTGAGAATGGTCTTTCAGCATTTCAATATATTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGa                                                                                        >  2:181782/1‑140 (MQ=255)

                                                  tCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGAt                                                                                    >  1:1201333/1‑140 (MQ=255)

                                                  tCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGAt                                                                                    >  2:294587/1‑140 (MQ=255)

                                                      cAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTgg                                                                                >  2:359022/1‑140 (MQ=255)

                                                        atatTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCg                                                                              <  1:1017305/140‑1 (MQ=255)

                                                        atatTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCg                                                                              <  1:4411/140‑1 (MQ=255)

                                                        atatTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCg                                                                              <  1:773025/140‑1 (MQ=255)

                                                         tatTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCgg                                                                             >  2:203085/1‑140 (MQ=255)

                                                         tatTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCgg                                                                             >  2:661104/1‑140 (MQ=255)

                                                         tatTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCgg                                                                             >  1:626390/1‑140 (MQ=255)

                                                             gAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCa                                                                         <  2:520688/140‑1 (MQ=255)

                                                              aGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCAt                                                                        >  2:1005743/1‑140 (MQ=255)

                                                                cgcgTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTa                                                                      >  1:937804/1‑140 (MQ=255)

                                                                 gcgTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTAc                                                                     >  2:92350/1‑140 (MQ=255)

                                                                   gTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCa                                                                         <  1:1102082/134‑1 (MQ=255)

                                                                   gTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCa                                                                         >  2:1102082/1‑134 (MQ=255)

                                                                   gTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCt                                                                   >  2:894400/1‑140 (MQ=255)

                                                                       ggcaggAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTagag                                                               <  1:162105/140‑1 (MQ=255)

                                                                               gTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTgag                                                       >  1:807481/1‑140 (MQ=255)

                                                                                tGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTgaga                                                      <  2:521808/140‑1 (MQ=255)

                                                                                  ggAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAAt                                                    >  2:916958/1‑140 (MQ=255)

                                                                                       ggTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCg                                               <  1:819069/140‑1 (MQ=255)

                                                                                          cTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAAc                                            <  1:1151127/140‑1 (MQ=255)

                                                                                           tttCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACa                                           <  1:44997/140‑1 (MQ=255)

                                                                                           tttCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACa                                           >  1:617423/1‑140 (MQ=255)

                                                                                              cAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATgc                                        >  1:832174/1‑140 (MQ=255)

                                                                                                    ttCAGTCTCTTCCCTCATCTGACTGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAAATGGCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATaa                                  <  2:1210843/140‑1 (MQ=255)

                                                                                                     tCAATCTCTTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAg                                 >  2:120166/1‑140 (MQ=255)

                                                                                                            ctTCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCg                          >  1:1194629/1‑140 (MQ=255)

                                                                                                              tCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGa                        <  2:542871/140‑1 (MQ=255)

                                                                                                              tCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGa                        <  1:773138/140‑1 (MQ=255)

                                                                                                              tCCCTCATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGAGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGa                        <  1:894400/140‑1 (MQ=255)

                                                                                                                   cATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGAt                   >  2:535128/1‑140 (MQ=255)

                                                                                                                   cATCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGAt                   >  2:839797/1‑140 (MQ=255)

                                                                                                                     tCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGAttt                 >  2:362605/1‑140 (MQ=255)

                                                                                                                     tCTGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGAttt                 >  2:845987/1‑140 (MQ=255)

                                                                                                                       tGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCa               >  1:740896/1‑140 (MQ=255)

                                                                                                                       tGACCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCa               >  2:989413/1‑140 (MQ=255)

                                                                                                                         aCCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCAgg             >  2:228593/1‑140 (MQ=255)

                                                                                                                         aCCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCAgg             >  1:674160/1‑140 (MQ=255)

                                                                                                                         aCCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCAgg             >  2:1066150/1‑140 (MQ=255)

                                                                                                                         aCCGTTTTACAGAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCAgg             >  1:85853/1‑140 (MQ=255)

                                                                                                                                    gAAATGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCAGGTGGTCagcagc  <  2:116591/140‑1 (MQ=255)

ACATCAACAGGGACGGATCGTGGTAGATGGCATCGAACTTAATGAAGATATCCGCAATATTGAGCGCGTCAGGCAGGAAGTGGGAATGGTCTTTCAGCATTTCAATCTCTTCCCTCATCTGACCGTTTTACAGAACTGTACCCTGGCACCGATTTGGGTACGCAAGATGCCTAAGAAAGAGGCTGAAGATCTGGCGGTGCATTACCTAGAGCGGGTGAGAATTGCCGAACATGCGCATAAGTTTCCCGGACAGATTTCAGGTGGTCAGCAGC  >  NC_000913/3422624‑3422895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A