Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 97.0 3206026 99.3% 3183583 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,460,302 A→G T417A (ACC→GCC)  paaH → 3‑hydroxyadipyl‑CoA dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,460,3020AG100.0% 343.7 / NA 89T417A (ACC→GCC) paaH3‑hydroxyadipyl‑CoA dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (46/43);  total (46/43)

TGCAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATACCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATT  >  NC_000913/1460168‑1460438
                                                                                                                                      |                                                                                                                                        
tGCAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATgccgcc                                                                                                                                     >  2:530336/1‑140 (MQ=255)
 gCAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCa                                                                                                                                    >  1:801861/1‑140 (MQ=255)
 gCAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCa                                                                                                                                    >  2:1598959/1‑140 (MQ=255)
 gCAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCa                                                                                                                                    >  2:327394/1‑140 (MQ=255)
  cAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCAt                                                                                                                                   <  2:949647/140‑1 (MQ=255)
  cAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCAt                                                                                                                                   >  2:1035087/1‑140 (MQ=255)
  cAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCAt                                                                                                                                   >  2:538647/1‑140 (MQ=255)
  cAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCAt                                                                                                                                   <  2:1251203/140‑1 (MQ=255)
  cAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCAt                                                                                                                                   <  2:1338722/140‑1 (MQ=255)
  cAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCAt                                                                                                                                   >  2:1583198/1‑140 (MQ=255)
   aaCAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATg                                                                                                                                  >  1:1562414/1‑140 (MQ=255)
       gcagGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTc                                                                                                                              <  1:223821/140‑1 (MQ=255)
        cagGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCt                                                                                                                             <  2:40146/140‑1 (MQ=255)
        cagGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCt                                                                                                                             >  1:1239964/1‑140 (MQ=255)
        cagGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCt                                                                                                                             >  2:998210/1‑140 (MQ=255)
            gCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTggg                                                                                                                         >  2:476338/1‑140 (MQ=255)
            gCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTggg                                                                                                                         <  1:409506/140‑1 (MQ=255)
             cAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTgggg                                                                                                                        >  2:1131901/1‑140 (MQ=255)
                aaCAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGa                                                                                                                     <  1:1266400/140‑1 (MQ=255)
                 aCAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGaa                                                                                                                    <  2:539197/140‑1 (MQ=255)
                 aCAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGaa                                                                                                                    <  2:571107/140‑1 (MQ=255)
                     tgctgcAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTAt                                                                                                                >  2:422802/1‑140 (MQ=255)
                            aaTTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATg                                                                                                         <  2:957885/140‑1 (MQ=255)
                             aTTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATgg                                                                                                        <  1:166896/140‑1 (MQ=255)
                               tGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGcc                                                                                                      >  1:886878/1‑140 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  2:1022829/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  1:862078/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  1:113531/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  2:1527787/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  2:545778/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  1:827307/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  2:614371/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  1:645252/140‑1 (MQ=255)
                                 cAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCa                                                                                                    <  1:680245/140‑1 (MQ=255)
                                        cccAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCt                                                                                             >  1:120931/1‑140 (MQ=255)
                                         ccAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTg                                                                                            <  2:1199873/140‑1 (MQ=255)
                                           aGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTggg                                                                                          <  1:114278/140‑1 (MQ=255)
                                           aGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTggg                                                                                          <  1:887802/140‑1 (MQ=255)
                                              aaTGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAg                                                                                       >  2:266168/1‑140 (MQ=255)
                                                tGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAgcg                                                                                     >  1:1450198/1‑140 (MQ=255)
                                                tGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAgcg                                                                                     >  1:465347/1‑140 (MQ=255)
                                                  cTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCa                                                                                   >  1:1547293/1‑140 (MQ=255)
                                                  cTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTAGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCa                                                                                   >  1:1449533/1‑140 (MQ=255)
                                                     aTTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACt                                                                                <  1:1583198/140‑1 (MQ=255)
                                                     aTTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACt                                                                                <  1:1035087/140‑1 (MQ=255)
                                                       ttGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTtg                                                                              >  1:851796/1‑140 (MQ=255)
                                                        tGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTtgg                                                                             >  1:261439/1‑140 (MQ=255)
                                                            gAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTtggctgg                                                                         <  1:1176610/140‑1 (MQ=255)
                                                             aaCGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTtggctggc                                                                        <  1:97562/140‑1 (MQ=255)
                                                              aCGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCa                                                                       <  2:1562414/140‑1 (MQ=255)
                                                                 gTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCg                                                                    <  1:953112/140‑1 (MQ=255)
                                                                 gTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCg                                                                    <  2:1467553/140‑1 (MQ=255)
                                                                          atcatcAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAg                                                           >  1:810882/1‑140 (MQ=255)
                                                                           tcatcaATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAgg                                                          <  1:476338/140‑1 (MQ=255)
                                                                              tcaATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTc                                                       >  1:1377076/1‑140 (MQ=255)
                                                                              tcaATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTc                                                       >  1:1288704/1‑140 (MQ=255)
                                                                               caATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTcc                                                      >  1:645840/1‑140 (MQ=255)
                                                                                  tGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTg                                                   >  1:1272230/1‑140 (MQ=255)
                                                                                   gAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGa                                                  <  2:801861/140‑1 (MQ=255)
                                                                                   gAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGa                                                  <  1:1265259/140‑1 (MQ=255)
                                                                                    aaGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGaa                                                 >  2:667072/1‑140 (MQ=255)
                                                                                    aaGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGaa                                                 >  1:620731/1‑140 (MQ=255)
                                                                                    aaGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGaa                                                 >  1:367217/1‑140 (MQ=255)
                                                                                      gCCCTTGATGTGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGaaaa                                               >  1:1184121/1‑140 (MQ=255)
                                                                                       cccTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCt                                                        <  2:1080071/130‑1 (MQ=255)
                                                                                       cccTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCt                                                        >  1:1080071/1‑130 (MQ=255)
                                                                                       cccTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAAt                                              >  2:906734/1‑140 (MQ=255)
                                                                                       cccTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAAt                                              >  1:352219/1‑140 (MQ=255)
                                                                                        ccTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATc                                             >  1:83399/1‑140 (MQ=255)
                                                                                                cgcTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCAt                                     <  2:465347/140‑1 (MQ=255)
                                                                                                cgcTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCAt                                     <  2:1450198/140‑1 (MQ=255)
                                                                                                cgcTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCAt                                     <  1:422802/140‑1 (MQ=255)
                                                                                                          aGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCg                           <  2:1566865/140‑1 (MQ=255)
                                                                                                          aGGCGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCg                           <  2:851796/140‑1 (MQ=255)
                                                                                                             cGTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGCAAAGCTACAGCATCACTATGGCgaag                        >  1:1579409/1‑140 (MQ=255)
                                                                                                              gTGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCgaaga                       <  2:352219/140‑1 (MQ=255)
                                                                                                               tGGCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCgaagaa                      >  2:781460/1‑140 (MQ=255)
                                                                                                                ggCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAAc                     >  2:176735/1‑140 (MQ=255)
                                                                                                                ggCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAAc                     >  2:1440175/1‑140 (MQ=255)
                                                                                                                 gCCTCTGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACg                    <  1:342835/140‑1 (MQ=255)
                                                                                                                   ctctGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCt                  <  1:1082823/140‑1 (MQ=255)
                                                                                                                   ctctGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCt                  >  1:1155929/1‑140 (MQ=255)
                                                                                                                      tGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATc               >  2:283981/1‑140 (MQ=255)
                                                                                                                      tGAACAGGATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATc               >  1:1524149/1‑140 (MQ=255)
                                                                                                                             gATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATg        >  2:266317/1‑140 (MQ=255)
                                                                                                                             gATATCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATg        >  2:463168/1‑140 (MQ=255)
                                                                                                                                atCGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGCGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGAATCACTATGGCGAAGAACGCTATCGCCCATGTTc     >  1:834378/1‑140 (MQ=255)
                                                                                                                                  cGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCAt   >  1:1518581/1‑140 (MQ=255)
                                                                                                                                  cGATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCAt   >  1:535178/1‑140 (MQ=255)
                                                                                                                                   gATGCCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCAtt  <  2:1547293/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                        
TGCAACAGCAGGGCAAAACAGTGCTGCAAATTGCAGATTACCCAGGAATGCTGATTTGGCGAACGGTAGCAATGATCATCAATGAAGCCCTTGATGCGCTTCAAAAAGGCGTGGCCTCTGAACAGGATATCGATACCGCCATGCGTCTTGGGGTGAATTATCCATATGGCCCACTTGCCTGGGGAGCGCAACTTGGCTGGCAGCGAATATTAAGGCTCCTTGAAAATCTACAGCATCACTATGGCGAAGAACGCTATCGCCCATGTTCATT  >  NC_000913/1460168‑1460438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A