Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F28 I1 R1	120	97.0	3206026	99.3%	3183583	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,362,020	A→G	C64C (TGT→TGC)	yfaX ←	putative DNA‑binding transcriptional regulator YfaX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,362,020	0	A	G	98.0%	376.6 / ‑2.6	103	C64C (TGT→TGC)	yfaX	putative DNA‑binding transcriptional regulator YfaX
Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (51/49); total (53/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.27e-01

Only 100 of 110 total aligned reads displayed.

CTGCCGTTATCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCA  >  NC_000913/2361883‑2362156

cTGCCGTTATCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCacaagca                                                                                                                                        >  2:1166288/1‑140 (MQ=255)

 tGCCGTTATCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCacaagcaa                                                                                                                                       >  1:1088549/1‑140 (MQ=255)

 tGCCGTTATCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCacaagcaa                                                                                                                                       >  2:1536465/1‑140 (MQ=255)

 tGCCGTTATCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCacaagcaa                                                                                                                                       >  2:515076/1‑140 (MQ=255)

     gTTATCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAAt                                                                                                                                   <  1:801571/140‑1 (MQ=255)

        aTCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAAtttt                                                                                                                                <  1:330544/140‑1 (MQ=255)

        aTCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAAtttt                                                                                                                                >  2:1586523/1‑140 (MQ=255)

            ataatCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTg                                                                                                                            <  1:960235/140‑1 (MQ=255)

            ataatCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTg                                                                                                                            <  1:1302079/140‑1 (MQ=255)

             taatCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTgg                                                                                                                           >  1:580668/1‑140 (MQ=255)

             taatCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTgg                                                                                                                           >  1:453902/1‑140 (MQ=255)

                tCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGa                                                                                                                        >  1:245252/1‑140 (MQ=255)

                  cccAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATc                                                                                                                      <  1:631773/140‑1 (MQ=255)

                  cccAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATc                                                                                                                      <  1:956794/140‑1 (MQ=255)

                  cccAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATc                                                                                                                      <  2:1462142/140‑1 (MQ=255)

                  cccAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATc                                                                                                                      <  1:1252043/140‑1 (MQ=255)

                   ccAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCa                                                                                                                     >  2:1326610/1‑140 (MQ=255)

                      ggTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAgg                                                                                                                  <  1:1573919/140‑1 (MQ=255)

                       gTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGc                                                                                                                 >  1:3758/1‑140 (MQ=255)

                            aTAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGa                                                                                                            >  2:799694/1‑140 (MQ=255)

                                cAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAAc                                                                                                        >  2:1149951/1‑140 (MQ=255)

                                  gCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGc                                                                                                      >  2:343482/1‑140 (MQ=255)

                                  gCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGc                                                                                                      >  1:18545/1‑140 (MQ=255)

                                   cccGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCt                                                                                                     <  2:453902/140‑1 (MQ=255)

                                   cccGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCt                                                                                                     >  2:1522027/1‑140 (MQ=255)

                                   cccGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCt                                                                                                     <  2:28574/140‑1 (MQ=255)

                                   cccGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCt                                                                                                     >  1:144922/1‑140 (MQ=255)

                                    ccGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTg                                                                                                    >  1:1186350/1‑140 (MQ=255)

                                        tggtATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGc                                                                                                >  2:792147/1‑140 (MQ=255)

                                         ggtATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGcc                                                                                               <  1:1035261/140‑1 (MQ=255)

                                            aTCCATCAGTTGCGTCAAGCGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGa                                                                                            <  1:1300365/140‑1 (MQ=255)

                                              ccATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGt                                                                                          <  2:1116956/140‑1 (MQ=255)

                                                  cAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCAt                                                                                      >  2:687979/1‑140 (MQ=255)

                                                  cAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCAt                                                                                      >  2:836344/1‑140 (MQ=255)

                                                   aGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCAtt                                                                                     <  2:654353/140‑1 (MQ=255)

                                                   aGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCAtt                                                                                     <  1:698200/140‑1 (MQ=255)

                                                    gTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTa                                                                                    >  1:398128/1‑140 (MQ=255)

                                                     ttGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTaa                                                                                   >  2:1600487/1‑140 (MQ=255)

                                                     ttGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTaa                                                                                   >  2:1194839/1‑140 (MQ=255)

                                                     ttGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTaa                                                                                   >  1:1386408/1‑140 (MQ=255)

                                                     ttGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTaa                                                                                   >  2:809729/1‑140 (MQ=255)

                                                     ttGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTaa                                                                                   >  2:852752/1‑140 (MQ=255)

                                                       gCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGTCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagc                                                                                 >  1:1481493/1‑140 (MQ=255)

                                                       gCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagc                                                                                 >  2:911789/1‑140 (MQ=255)

                                                       gCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagc                                                                                 <  1:1148149/140‑1 (MQ=255)

                                                       gCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagc                                                                                 <  1:62913/140‑1 (MQ=255)

                                                       gCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagc                                                                                 >  1:411646/1‑140 (MQ=255)

                                                        cGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagca                                                                                <  1:708209/140‑1 (MQ=255)

                                                        cGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagca                                                                                >  2:1167763/1‑140 (MQ=255)

                                                         gTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagcag                                                                               >  1:1264806/1‑140 (MQ=255)

                                                          tCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAagcagc                                                                              >  1:1073089/1‑140 (MQ=255)

                                                                    tCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCg                                                                    <  1:959344/140‑1 (MQ=255)

                                                                     cGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGt                                                                   <  1:1563755/140‑1 (MQ=255)

                                                                             ttCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAg                                                           >  2:334197/1‑140 (MQ=255)

                                                                              tCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAgg                                                          <  1:1586523/140‑1 (MQ=255)

                                                                                  ggAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGAtt                                                      >  2:750763/1‑140 (MQ=255)

                                                                                  ggAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGAtt                                                      >  2:550134/1‑140 (MQ=255)

                                                                                    agaTCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTcc                                                    <  2:1264806/140‑1 (MQ=255)

                                                                                      aTCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCa                                                  >  1:1125162/1‑140 (MQ=255)

                                                                                      aTCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCa                                                  <  1:343482/140‑1 (MQ=255)

                                                                                      aTCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCa                                                  <  1:817535/140‑1 (MQ=255)

                                                                                       tCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCaa                                                 >  1:1360464/1‑140 (MQ=255)

                                                                                       tCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCaa                                                 <  2:613078/140‑1 (MQ=255)

                                                                                        ccATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                <  1:575545/140‑1 (MQ=255)

                                                                                        ccATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                <  1:911789/140‑1 (MQ=255)

                                                                                        ccATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                <  2:18545/140‑1 (MQ=255)

                                                                                        ccATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                <  1:836344/140‑1 (MQ=255)

                                                                                        ccATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAt                                                <  1:85473/140‑1 (MQ=255)

                                                                                         cATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAtg                                               >  2:719117/1‑140 (MQ=255)

                                                                                         cATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAAtg                                               <  2:144922/140‑1 (MQ=255)

                                                                                              tGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCa                                          >  2:1536842/1‑140 (MQ=255)

                                                                                                cTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAAt                                        >  1:618563/1‑140 (MQ=255)

                                                                                                 ttAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATg                                       <  1:499282/140‑1 (MQ=255)

                                                                                                     cGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCa                                          >  2:781560/1‑133 (MQ=255)

                                                                                                     cGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCa                                          <  1:781560/133‑1 (MQ=255)

                                                                                                     cGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcg                                   >  1:1167354/1‑140 (MQ=255)

                                                                                                     cGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcg                                   >  1:36565/1‑140 (MQ=255)

                                                                                                        aTGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcgtcg                                <  1:809729/140‑1 (MQ=255)

                                                                                                        aTGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcgtcg                                <  1:1194839/140‑1 (MQ=255)

                                                                                                        aTGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcgtcg                                <  1:4547/140‑1 (MQ=255)

                                                                                                        aTGACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGAtcgtcg                                <  1:1326610/140‑1 (MQ=255)

                                                                                                          gACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCgca                              >  2:226125/1‑140 (MQ=255)

                                                                                                          gACCGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCgca                              >  1:1284863/1‑140 (MQ=255)

                                                                                                             cGGAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCgcagca                           <  1:297298/140‑1 (MQ=255)

                                                                                                               gAAAGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACt                         >  2:173798/1‑140 (MQ=255)

                                                                                                                 aaGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCGTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTAc                       <  1:1522027/140‑1 (MQ=255)

                                                                                                                 aaGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTAc                       <  1:1402956/140‑1 (MQ=255)

                                                                                                                  aGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACa                      <  1:122536/140‑1 (MQ=255)

                                                                                                                  aGCTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACa                      <  2:1360464/140‑1 (MQ=255)

                                                                                                                    cTCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAgg                    >  2:1438707/1‑140 (MQ=255)

                                                                                                                     tCCACCAGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAggg                   <  2:1186350/140‑1 (MQ=255)

                                                                                                                       caccaGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGc                 <  1:1600487/140‑1 (MQ=255)

                                                                                                                       caccaGCCTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGc                 >  1:340842/1‑140 (MQ=255)

                                                                                                                              cTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGCCGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCg          <  2:316645/140‑1 (MQ=255)

                                                                                                                              cTGGTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCg          >  1:1133203/1‑140 (MQ=255)

                                                                                                                                ggTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCggg        <  1:687979/140‑1 (MQ=255)

                                                                                                                                 gTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGc       >  1:428404/1‑140 (MQ=255)

                                                                                                                                 gTCCACAAGCAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGc       >  1:929870/1‑140 (MQ=255)

                                                                                                                                    cacaAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAAt    <  1:1149951/140‑1 (MQ=255)

                                                                                                                                      caagcaaaAATTTTCCTGGGGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCa  >  2:488203/1‑140 (MQ=255)

CTGCCGTTATCAATAATCCCCAGGTGACATAACAGCCCGGTGGTATCCATCAGTTGCGTCAAACGCGGTCGAGCCAGTTCCCGGAGATCCATCTTGCTTAACGCATGACCGGAAAGCTCCACCAGCCTGGTCCACAAACAAAAATTTTCCTGGTGATCAAGGCTAAGAAAACGCTGACGCCTGAGTTCATTAAGCAGCAAATAGGCCGTGCTTTTAGGGATTCCCAATGTGTCAATGATCGTCGCAGCACTACAGGGGCCAATGCGGGCAATCA  >  NC_000913/2361883‑2362156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A