Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 120 97.0 3206026 99.3% 3183583 140.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,646,693 C→T W211* (TGG→TGA)  pbpC ← peptidoglycan glycosyltransferase PbpC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,646,6930CT100.0% 192.4 / NA 58W211* (TGG→TGA) pbpCpeptidoglycan glycosyltransferase PbpC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (44/14);  total (44/14)

GTGCCAGTTGCGGCATTTGTCGGGGGGCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGCCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACGTACCGCC  >  NC_000913/2646557‑2646827
                                                                                                                                        |                                                                                                                                      
gTGCCAGTTGCGGCATTTGTCGGGGGGCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCaa                                                                                                                                     <  2:171605/140‑1 (MQ=255)
     aGTTGCGGCATTTGTCGGGGGGCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATc                                                                                                                                <  1:1193458/140‑1 (MQ=255)
     aGTTGCGGCATTTGTCGGGGGGCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATc                                                                                                                                <  1:896538/140‑1 (MQ=255)
           ggCATTTGTCGGGGGGCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCg                                                                                                                          >  2:788932/1‑140 (MQ=255)
               cttGTCGGGGGGCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGa                                                                                                                      >  1:804653/2‑140 (MQ=255)
                       ggggCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGACTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTggg                                                                                                              >  1:368136/1‑140 (MQ=255)
                                   aTGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCaa                                                                                                  >  1:1566442/1‑140 (MQ=255)
                                    tGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCaaa                                                                                                 >  2:969958/1‑140 (MQ=255)
                                          cttcCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGcc                                                                                           >  2:1287469/1‑140 (MQ=255)
                                                  gcctctTTTCCCTGCTCACGGGCCCACACACCTTGCACGGCCATCCGTTCGAGCCCTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTgc                                                                                   <  2:1360722/138‑1 (MQ=255)
                                                  gACTCTTTTCCCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTCCGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTgc                                                                                   <  1:250792/140‑1 (MQ=255)
                                                  gACTCTTTTACCTGCTCACGGGACCACCCACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTgc                                                                                   <  2:209984/140‑1 (MQ=255)
                                                  gACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTgc                                                                                   <  1:66842/140‑1 (MQ=255)
                                                  gACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCAGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTgc                                                                                   >  1:1534266/1‑140 (MQ=255)
                                                           aCCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGa                                                                          >  1:835968/1‑140 (MQ=255)
                                                            ccTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGaa                                                                         <  1:648771/140‑1 (MQ=255)
                                                               gCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAg                                                                      >  2:1492127/1‑140 (MQ=255)
                                                               gCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAg                                                                      >  1:672208/1‑140 (MQ=255)
                                                                 tCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGGATAGCt                                                                    >  2:1237192/1‑140 (MQ=255)
                                                                 tCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCt                                                                    >  2:1078384/1‑140 (MQ=255)
                                                                     gggACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTaaa                                                                >  2:1065686/1‑140 (MQ=255)
                                                                          cacacaCCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGc                                                           >  2:450377/1‑140 (MQ=255)
                                                                          cacacaCCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGc                                                           >  2:551262/1‑140 (MQ=255)
                                                                          cacacaCCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGc                                                           >  2:635352/1‑140 (MQ=255)
                                                                           ccacccCTTGCGGGGCCATCCGTCCGGGCGCTTTATTACGCGCGGCTTCGGCGCGCCCCGGCCAACGATCCGGGGGAAGGCGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCa                                                          <  2:659563/139‑1 (MQ=255)
                                                                               cccTTGCCCGGCCATCCGTTCGAGCGCTTTATTCCGCGCGGCTTCGGCCCGCTCCGGTCAACGATCGGGGCGAAGACGGTTGGGCGCTTGCGGCAAACCCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCg                                                      <  2:203199/139‑1 (MQ=255)
                                                                                 cTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAt                                                    >  2:335046/1‑140 (MQ=255)
                                                                                 cTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAt                                                    >  2:136228/1‑140 (MQ=255)
                                                                                 cTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAt                                                    >  1:158421/1‑140 (MQ=255)
                                                                                 cTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAt                                                    >  2:266292/1‑140 (MQ=255)
                                                                                   tGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAttt                                                  >  1:666723/1‑140 (MQ=255)
                                                                                   tGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAttt                                                  >  2:1237262/1‑140 (MQ=255)
                                                                                    gCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAtttt                                                 >  1:634355/1‑140 (MQ=255)
                                                                                    gCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGAtttt                                                 >  2:1385367/1‑140 (MQ=255)
                                                                                         gCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCgag                                            >  2:47116/1‑140 (MQ=255)
                                                                                         gCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCgag                                            >  1:653250/1‑140 (MQ=255)
                                                                                         gCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCgag                                            >  2:471907/1‑140 (MQ=255)
                                                                                           cATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGAt                                          >  1:1527735/1‑140 (MQ=255)
                                                                                           cATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGAt                                          >  2:165178/1‑140 (MQ=255)
                                                                                             tCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATaa                                        >  1:1541565/1‑140 (MQ=255)
                                                                                             tCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATaa                                        >  1:800463/1‑140 (MQ=255)
                                                                                             tCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATaa                                        >  1:1217642/1‑140 (MQ=255)
                                                                                               cGTTCGAGCTCTTTATTACGCGCGGCTCCGGCACGCCCCGGTCAACGATCCGGGCGAAGACGGTTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGc                                      <  2:717062/140‑1 (MQ=255)
                                                                                                  tcaggCACTTTTTTACGCGCGGCGTGGGCCCGCTCCGTGCAACGTTCCGGGCGATGATGGCCGGGCGCTTGCGTCAAATCCGCCAGCATTGCCGCCGCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCa                                   <  2:1121645/136‑1 (MQ=255)
                                                                                                  ccGAGCACTTTTTTACGCGCGGCTTGGGCACGCTCCGGTCAACGACCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCa                                   <  2:568030/139‑1 (MQ=255)
                                                                                                    gAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAAc                                 >  1:279728/1‑140 (MQ=255)
                                                                                                     ggCACTTTATTAGCCGGGACTGCGGCACGCCCCGGTCAACGATCCGGGCAAAGACGGCGGTGCGCTGGGGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACt                                <  2:870736/139‑1 (MQ=255)
                                                                                                       cACTTTATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTg                              >  2:421484/1‑140 (MQ=255)
                                                                                                          tttATTCCGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCg                           <  2:1295209/140‑1 (MQ=255)
                                                                                                          tttATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCg                           <  2:1566442/140‑1 (MQ=255)
                                                                                                          tttATTACGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCg                           <  1:251112/140‑1 (MQ=255)
                                                                                                               tgcgcgggGCTTCGGCCCGCTCCGGTCAACGATCCGGGGGAAGACGGGTGGGCGCTTGGGCCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGA‑TTTCCGAGATAAGCCCAACTTGCCGCACCGa                     <  2:268348/138‑1 (MQ=255)
                                                                                                               taCGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCTCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCg                      <  2:804653/140‑1 (MQ=255)
                                                                                                               taCGCGCGGCTCCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCg                      <  1:477472/140‑1 (MQ=255)
                                                                                                                aCGCGCGGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGa                     >  1:1307225/1‑140 (MQ=255)
                                                                                                                  gcgcgGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATc                   >  1:113102/1‑140 (MQ=255)
                                                                                                                  gcgcgGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATc                   <  1:788932/140‑1 (MQ=255)
                                                                                                                  gcgcgGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATc                   <  1:1237262/140‑1 (MQ=255)
                                                                                                                    gcgGCTTCGGCCCGCCCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTGGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATccc                 <  2:578404/140‑1 (MQ=255)
                                                                                                                    gcgGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATccc                 >  1:242511/1‑140 (MQ=255)
                                                                                                                    gcgGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATccc                 >  2:84025/1‑140 (MQ=255)
                                                                                                                    gcgGCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATccc                 >  2:981010/1‑140 (MQ=255)
                                                                                                                      ggCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCt               >  2:1406034/1‑140 (MQ=255)
                                                                                                                       gCTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTg              >  2:671048/1‑140 (MQ=255)
                                                                                                                        cTTCGGCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGc             >  2:232464/1‑140 (MQ=255)
                                                                                                                         tccGGCACGCTCCGGTCAACGATCGGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCa            <  1:1097574/138‑1 (MQ=255)
                                                                                                                            ggCACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACg         <  1:1385367/140‑1 (MQ=255)
                                                                                                                              cACGCTCGGGTCAACGATCCGGGCGAAGCCGGCGGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACGTa       <  2:1217642/140‑1 (MQ=255)
                                                                                                                              cACGCTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACGTa       <  1:335046/140‑1 (MQ=255)
                                                                                                                                  cTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACGTACCGc   >  2:189208/1‑140 (MQ=255)
                                                                                                                                  cTCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACGTACCGc   >  2:1548247/1‑140 (MQ=255)
                                                                                                                                   tCCGGTCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACGTACCGcc  >  2:334492/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GTGCCAGTTGCGGCATTTGTCGGGGGGCCAGCCAGATGGGTTCTTCCCTTGACTCTTTTACCTGCTCACGGGACCACACACCTTGCACGGCCATCCGTTCGAGCACTTTATTACGCGCGGCTTCGGCACGCTCCGGCCAACGATCCGGGCGAAGACGGCTGGGCGCTTGCGGCAAAACCGCCAGCATTGCCGCCTCGGAATAGCTTAAATTCGCAGGCGATTTTCCGAGATAAGCCCAACTTGCCGCACCGATCCCCTGCAACGTACCGCC  >  NC_000913/2646557‑2646827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A