Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 116 98.7 3298914 99.2% 3272522 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,560,085 (T)6→7 intergenic (+19/‑172) intZ → / → yffL CPZ‑55 prophage; putative phage integrase IntZ/CPZ‑55 prophage; uncharacterized protein YffL

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,560,0791.T98.4% 213.7 / ‑3.6 63intergenic (+13/‑178)intZ/yffLCPZ‑55 prophage; putative phage integrase IntZ/CPZ‑55 prophage; uncharacterized protein YffL
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base T (28/34);  total (28/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

GAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGC‑TTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTA  >  NC_000913/2559940‑2560210
                                                                                                                                            |                                                                                                                                    
gAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGc                                                                                                                                       <  2:646474/140‑1 (MQ=255)
       aTAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGC‑ttttt‑tt                                                                                                                              >  2:1059572/1‑139 (MQ=255)
       aTAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGC‑ttttt‑tt                                                                                                                              >  1:425301/1‑139 (MQ=255)
        tAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGC‑ttttt‑ttg                                                                                                                             >  1:1607926/1‑138 (MQ=255)
              gCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAgc                                                                                                                        >  1:898460/1‑140 (MQ=255)
               cGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAgcg                                                                                                                       <  2:267375/140‑1 (MQ=255)
               cGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAgcg                                                                                                                       <  2:350588/140‑1 (MQ=255)
                gTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAgcgc                                                                                                                      >  1:90017/1‑140 (MQ=255)
                      aaCCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAAtttt                                                                                                                <  1:460107/140‑1 (MQ=255)
                         cAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCa                                                                                                             <  2:1503686/140‑1 (MQ=255)
                         cAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCa                                                                                                             <  2:538116/140‑1 (MQ=255)
                         cAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCa                                                                                                             <  1:25744/140‑1 (MQ=255)
                         cAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACAGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCCATTTTGCa                                                                                                             <  2:1419469/140‑1 (MQ=255)
                         cAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGAAGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCa                                                                                                             <  2:49567/140‑1 (MQ=255)
                          aGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAt                                                                                                            <  2:915185/140‑1 (MQ=255)
                           ggCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAtt                                                                                                           <  1:1604553/140‑1 (MQ=255)
                           ggCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAtt                                                                                                           >  2:501919/1‑140 (MQ=255)
                           ggCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAtt                                                                                                           <  1:1253929/140‑1 (MQ=255)
                            gCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAttt                                                                                                          >  2:666178/1‑140 (MQ=255)
                            gCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAttt                                                                                                          >  2:513503/1‑140 (MQ=255)
                            gCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAttt                                                                                                          >  1:277583/1‑140 (MQ=255)
                            gCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAAAGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAttt                                                                                                          >  2:1548382/1‑140 (MQ=255)
                            gCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAAACGGGATGCAAAATTCAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCAttt                                                                                                          >  2:689416/1‑140 (MQ=255)
                              tGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTg                                                                                                        >  2:653100/1‑140 (MQ=255)
                                ccTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGta                                                                                                      >  1:1246111/1‑140 (MQ=255)
                                  tACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGtata                                                                                                    <  1:1143722/140‑1 (MQ=255)
                                          gCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTAtttg                                                                                            >  1:788580/1‑140 (MQ=255)
                                          gCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGAAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTAtttg                                                                                            >  1:915098/1‑140 (MQ=255)
                                              cGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTAtttgtttt                                                                                        >  1:1196336/1‑140 (MQ=255)
                                                 cGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtg                                                                                     <  2:768210/140‑1 (MQ=255)
                                                 cGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtg                                                                                     <  2:982569/140‑1 (MQ=255)
                                                 cGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtg                                                                                     <  2:702248/140‑1 (MQ=255)
                                                 cGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtg                                                                                     <  1:682633/140‑1 (MQ=255)
                                                 cGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtg                                                                                     <  1:782106/140‑1 (MQ=255)
                                                  gAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtgt                                                                                    <  2:842767/140‑1 (MQ=255)
                                                   aGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtgtg                                                                                   >  2:1611365/1‑140 (MQ=255)
                                                      aaTGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGtt                                                                                <  1:510563/140‑1 (MQ=255)
                                                      aaTGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGtt                                                                                <  1:653100/140‑1 (MQ=255)
                                                        tgatgCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTa                                                                              <  1:133643/140‑1 (MQ=255)
                                                         gatgCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTaa                                                                             <  1:1059572/140‑1 (MQ=255)
                                                         gatgCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTaa                                                                             <  2:1364015/140‑1 (MQ=255)
                                                         gatgCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTaa                                                                             <  2:1607926/140‑1 (MQ=255)
                                                          atgCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAAc                                                                            <  1:1549592/140‑1 (MQ=255)
                                                                  ttACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCt                                                                    >  2:924827/1‑140 (MQ=255)
                                                                  ttACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCt                                                                    <  1:708026/140‑1 (MQ=255)
                                                                    aCGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGa                                                                  >  1:730848/1‑140 (MQ=255)
                                                                          aCGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGaa                                                            >  2:1430186/1‑140 (MQ=255)
                                                                          aCGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGaa                                                            >  1:331016/1‑140 (MQ=255)
                                                                                             ggCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCg                                         >  2:1335131/1‑140 (MQ=255)
                                                                                                   tAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCg                                   >  2:1132495/1‑140 (MQ=255)
                                                                                                   tAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCg                                   >  1:78900/1‑140 (MQ=255)
                                                                                                   tAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGGATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCg                                   >  2:380185/1‑140 (MQ=255)
                                                                                                            tCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTTTATTCAATTTGCCGGCTTCGTCCGGcttt                          >  1:991978/1‑140 (MQ=255)
                                                                                                            tCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttt                          >  1:737404/1‑140 (MQ=255)
                                                                                                                     aCCGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCg                 <  2:157301/140‑1 (MQ=255)
                                                                                                                     aCCGGAATGAATAATTAAGCGGC‑TTTTTGTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCg                 <  1:689416/140‑1 (MQ=255)
                                                                                                                      ccGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGc                >  1:1042011/1‑140 (MQ=255)
                                                                                                                       cGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCt               <  1:1611365/140‑1 (MQ=255)
                                                                                                                       cGGAATGAATAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCt               <  2:1154078/140‑1 (MQ=255)
                                                                                                                         gaatgaatAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTaa             >  2:1306622/1‑140 (MQ=255)
                                                                                                                         gaatgaatAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTACATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTaa             >  1:1341899/1‑140 (MQ=255)
                                                                                                                            tgaatAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAatta          <  2:317426/140‑1 (MQ=255)
                                                                                                                            tgaatAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAatta          <  1:134561/140‑1 (MQ=255)
                                                                                                                             gaatAATTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattat         <  2:115028/140‑1 (MQ=255)
                                                                                                                              aataatTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattatt        >  2:341212/1‑140 (MQ=255)
                                                                                                                                 aatTAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattattcca     <  2:1196336/140‑1 (MQ=255)
                                                                                                                                    tAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattattccatta  <  1:501919/140‑1 (MQ=255)
                                                                                                                                    tAAGCGGCTTTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattattccatta  >  1:945443/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                    
GAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGC‑TTTTT‑TGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTA  >  NC_000913/2559940‑2560210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A