Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F28 I1 R1
|
120 |
56.0 |
1898522 |
99.4% |
1887130 |
138.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
683,784 |
T→C |
N210S (AAC→AGC) |
rihA ← |
pyrimidine‑specific ribonucleoside hydrolase RihA |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 683,784 | 0 | T | C | 100.0%
| 224.3
/ NA
| 62 | N210S (AAC→AGC) | rihA | pyrimidine‑specific ribonucleoside hydrolase RihA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/32); total (30/32) |
AATAACTCCGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTA > NC_000913/683652‑683911
|
aaTAACTCCGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAAt > 2:903394/1‑140 (MQ=255)
aaTAACTCCGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAAt > 1:946948/1‑140 (MQ=255)
aCTCCGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATcgcg < 1:638606/140‑1 (MQ=255)
aCTCCGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATcgcg < 2:289356/140‑1 (MQ=255)
ccGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCgg > 2:585072/1‑140 (MQ=255)
cGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGa < 1:374409/140‑1 (MQ=255)
cAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCt > 1:150949/1‑140 (MQ=255)
cAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCgg < 2:21540/140‑1 (MQ=255)
aGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGgt < 1:903394/140‑1 (MQ=255)
aGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAAGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGgt < 2:946948/140‑1 (MQ=255)
ggCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCtt < 2:866430/140‑1 (MQ=255)
cGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCa > 2:415900/1‑140 (MQ=255)
tGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACg < 2:211465/140‑1 (MQ=255)
tGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACg < 1:672076/140‑1 (MQ=255)
ggTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGt > 2:27348/1‑140 (MQ=255)
cATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCa < 2:117529/132‑1 (MQ=255)
cATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCa > 1:117529/1‑132 (MQ=255)
aTGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGAtt > 1:35470/1‑140 (MQ=255)
gggTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTtg < 1:79477/140‑1 (MQ=255)
gTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGAt > 2:341456/1‑135 (MQ=255)
gTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGAt < 1:341456/135‑1 (MQ=255)
gTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTtgtg > 1:601848/1‑140 (MQ=255)
cATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCt < 2:698143/140‑1 (MQ=255)
aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCtt > 1:104369/1‑140 (MQ=255)
aTGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCtt > 1:867300/1‑140 (MQ=255)
gCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTa < 1:354909/140‑1 (MQ=255)
cAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTAt < 1:585072/140‑1 (MQ=255)
cAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTAt < 2:435947/140‑1 (MQ=255)
tggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAg > 1:841619/1‑140 (MQ=255)
ggtgCGCCGACAAAGCCCTATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGt > 1:743089/1‑140 (MQ=255)
ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCttt > 2:218816/1‑134 (MQ=255)
ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCttt < 1:218816/134‑1 (MQ=255)
ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTAt < 2:535165/136‑1 (MQ=255)
ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTAt > 1:535165/1‑136 (MQ=255)
ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGt < 2:684753/140‑1 (MQ=255)
ggtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGt > 2:893374/1‑140 (MQ=255)
gtgCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTa > 2:739865/1‑140 (MQ=255)
cgcCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACa > 1:803220/1‑140 (MQ=255)
ccGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCt < 2:924577/126‑1 (MQ=255)
ccGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCt > 1:924577/1‑126 (MQ=255)
cATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCAt < 1:415900/140‑1 (MQ=255)
tATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATc > 1:394881/1‑140 (MQ=255)
atTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGAc < 2:867300/140‑1 (MQ=255)
ttCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACt > 2:532439/1‑140 (MQ=255)
tCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTg > 2:808074/1‑140 (MQ=255)
cGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTgg > 1:25676/1‑140 (MQ=255)
ggAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCg < 2:272237/123‑1 (MQ=255)
ggAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCg > 1:272237/1‑123 (MQ=255)
ggAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAg > 2:378950/1‑140 (MQ=255)
agaaATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGGGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACa > 2:563424/1‑140 (MQ=255)
aTCCAGCAGTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAAttt < 2:731569/140‑1 (MQ=255)
agcagTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGc < 2:150949/140‑1 (MQ=255)
gcagTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCGCCACCGGGATCCCTGACTGGAAGACAATTTCTGcc > 2:812788/1‑140 (MQ=255)
cagTTCGGCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCg > 1:850783/1‑140 (MQ=255)
gCAACAATGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCgg < 2:803220/140‑1 (MQ=255)
aacaaTGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCTGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGt < 2:743089/140‑1 (MQ=255)
aacaaTGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGt < 1:27348/140‑1 (MQ=255)
aacaaTGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGt < 1:808074/140‑1 (MQ=255)
aacaaTGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGt < 1:532439/140‑1 (MQ=255)
tGGTTGAAACAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACg < 2:35470/140‑1 (MQ=255)
aCAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTa > 2:781940/1‑134 (MQ=255)
aCAGGGCTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTa < 1:781940/134‑1 (MQ=255)
|
AATAACTCCGGTTTCAACAGCCAGGCGATGGTGCATGGGTCATGCAGTGGTGCGCCGACAAAGCCCCATTTTTCGTCTTTATGATATTCGAGGAAGAAATCCAGCAGTTCGGCAACAATGGTTGAAACAGGGTTACCAATCGCGCGGAAACGCTCGGTGTCTTCAACGTGGATTTGTGCTTTATGAGTAACATCCAGACCGGCCATCACCACCGGGATCCCTGACTGGAAGACAATTTCTGCCGCTTCCGGGTCAACGTA > NC_000913/683652‑683911
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A