Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 106 90.3 3060316 99.2% 3035833 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,904,050 C→T R52R (CGC→CGT)  manZ → mannose‑specific PTS enzyme IID component

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,904,0500CT100.0% 214.5 / NA 63R52R (CGC→CGT) manZmannose‑specific PTS enzyme IID component
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (38/25);  total (38/25)

ACTACCACCGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTAATGGCGCA  >  NC_000913/1903913‑1904185
                                                                                                                                         |                                                                                                                                       
aCTACCACCGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTct                                                                                                                                       >  1:116581/1‑140 (MQ=255)
aCTACCACCGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTct                                                                                                                                       <  1:7214/140‑1 (MQ=255)
  tACCACCGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTctct                                                                                                                                     <  1:1289962/140‑1 (MQ=255)
     caccGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTAcc                                                                                                                                  <  2:625494/140‑1 (MQ=255)
     caccGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTAcc                                                                                                                                  <  1:371872/140‑1 (MQ=255)
       ccGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCt                                                                                                                                <  1:1120701/140‑1 (MQ=255)
        cGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTg                                                                                                                               >  2:1153281/1‑140 (MQ=255)
            aaaaaaCTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGaa                                                                                                                           >  1:1462627/1‑140 (MQ=255)
               aaaCTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGaacaa                                                                                                                        <  2:716202/140‑1 (MQ=255)
                  ctcactcaAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGa                                                                                                                     <  2:1501355/140‑1 (MQ=255)
                  ctcactcaAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGa                                                                                                                     <  1:1252233/140‑1 (MQ=255)
                  ctcactcaAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGa                                                                                                                     >  1:371167/1‑140 (MQ=255)
                           aGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTaa                                                                                                            >  1:1240674/1‑140 (MQ=255)
                             tGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAAc                                                                                                          <  2:1451167/140‑1 (MQ=255)
                                 atTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGc                                                                                                      >  1:708407/1‑140 (MQ=255)
                                     gTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTAtt                                                                                                  >  2:820619/1‑140 (MQ=255)
                                         cGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGcc                                                                                              <  1:596605/140‑1 (MQ=255)
                                         cGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGcc                                                                                              <  1:1240877/140‑1 (MQ=255)
                                           tCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGt                                                                                            >  2:38286/1‑140 (MQ=255)
                                              tCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAc                                                                                         >  1:1013199/1‑140 (MQ=255)
                                               ccTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCAcc                                                                                        <  2:1330975/140‑1 (MQ=255)
                                                   cGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGa                                                                                    <  2:375868/140‑1 (MQ=255)
                                                   cGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGa                                                                                    <  1:673051/140‑1 (MQ=255)
                                                   cGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGa                                                                                    >  2:928698/1‑140 (MQ=255)
                                                    gTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAg                                                                                   <  1:696095/140‑1 (MQ=255)
                                                       cTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTc                                                                                >  2:201024/1‑140 (MQ=255)
                                                        tAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCt                                                                               >  2:1288594/1‑140 (MQ=255)
                                                               ttCCAGGATTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAacac                                                                        >  1:932646/1‑140 (MQ=255)
                                                                tCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACAcc                                                                       >  1:551994/1‑140 (MQ=255)
                                                                   aGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAg                                                                    <  2:1216046/140‑1 (MQ=255)
                                                                      gTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCg                                                                 >  1:405563/1‑140 (MQ=255)
                                                                         cATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTc                                                              >  1:486165/1‑140 (MQ=255)
                                                                         cATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTc                                                              >  1:932359/1‑140 (MQ=255)
                                                                         cATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTc                                                              >  1:329572/1‑140 (MQ=255)
                                                                          aTGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCg                                                             >  1:166299/1‑140 (MQ=255)
                                                                                 ttCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTgc                                                      >  1:614335/1‑140 (MQ=255)
                                                                                 ttCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTgc                                                      >  1:452453/1‑140 (MQ=255)
                                                                                          aTGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATtct                                             <  2:285389/140‑1 (MQ=255)
                                                                                          aTGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATtct                                             <  2:1240674/140‑1 (MQ=255)
                                                                                               ggCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCg                                        <  1:419091/140‑1 (MQ=255)
                                                                                                  aCTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTaa                                     >  1:879898/1‑140 (MQ=255)
                                                                                                  aCTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTaa                                     >  1:52564/1‑140 (MQ=255)
                                                                                                  aCTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTaa                                     >  1:507371/1‑140 (MQ=255)
                                                                                                  aCTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGACACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTaa                                     >  2:410080/1‑140 (MQ=255)
                                                                                                         ttCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGgc                              <  1:1153281/140‑1 (MQ=255)
                                                                                                         ttCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGgc                              <  2:932359/140‑1 (MQ=255)
                                                                                                          tCTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGgcg                             <  2:116581/140‑1 (MQ=255)
                                                                                                           cTGCTTCTCTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGgcgc                            <  1:201024/140‑1 (MQ=255)
                                                                                                                tctcTATGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGgaa                       >  1:915908/1‑140 (MQ=255)
                                                                                                                      tGGTACCGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAg                 <  1:629910/140‑1 (MQ=255)
                                                                                                                           ccGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGc            >  2:1202605/1‑140 (MQ=255)
                                                                                                                           ccGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGc            >  1:813688/1‑140 (MQ=255)
                                                                                                                           ccGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGc            >  2:133377/1‑140 (MQ=255)
                                                                                                                           ccGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGc            >  1:1295508/1‑140 (MQ=255)
                                                                                                                           ccGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGc            >  1:1225193/1‑140 (MQ=255)
                                                                                                                            cGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCt           >  1:316998/1‑140 (MQ=255)
                                                                                                                            cGGCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCt           >  2:409027/1‑140 (MQ=255)
                                                                                                                              gCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTaa         <  2:1360986/140‑1 (MQ=255)
                                                                                                                              gCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTaa         >  2:741601/1‑140 (MQ=255)
                                                                                                                              gCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTaa         >  2:812759/1‑140 (MQ=255)
                                                                                                                              gCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTaa         >  2:878560/1‑140 (MQ=255)
                                                                                                                              gCAATTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTaa         >  1:615547/1‑140 (MQ=255)
                                                                                                                                aaTTCGTCGTCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTAATg       >  1:569693/1‑140 (MQ=255)
                                                                                                                                     gtcgtcTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTAATGGCGCa  <  1:1516344/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
ACTACCACCGAGAAAAAACTCACTCAAAGTGATATTCGTGGCGTCTTCCTGCGTTCTAACCTCTTCCAGGGTTCATGGAACTTCGAACGTATGCAGGCACTGGGTTTCTGCTTCTCTATGGTACCGGCAATTCGTCGCCTCTACCCTGAGAACAACGAAGCTCGTAAACAAGCTATTCGCCGTCACCTGGAGTTCTTTAACACCCAGCCGTTCGTGGCTGCGCCGATTCTCGGCGTAACCCTGGCGCTGGAAGAACAGCGTGCTAATGGCGCA  >  NC_000913/1903913‑1904185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A