Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I1 R1	106	90.3	3060316	99.2%	3035833	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,636,286	(C)_6→7	coding (1125/1203 nt)	yhiN ←	putative oxidoreductase YhiN

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,636,280	1	.	C	98.6%	268.6 / ‑4.5	74	G377G (GGC→GGG)	yhiN	putative oxidoreductase YhiN
Reads supporting (aligned to +/- strand): ref base . (0/1); major base C (27/45); minor base T (1/0); total (28/46)
Fisher's exact test for biased strand distribution p-value = 3.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01

GATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑CCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGCAGTGCGATAGCC  >  NC_000913/3636141‑3636414

gATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAg                                                                                                                                         >  2:1310198/1‑140 (MQ=255)

gATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAg                                                                                                                                         <  1:403215/140‑1 (MQ=255)

 aTAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑c                                                                                                                                       >  2:59532/1‑140 (MQ=255)

   aaCCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑ccc                                                                                                                                     >  2:318236/1‑140 (MQ=255)

        cTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑ccccccca                                                                                                                                >  1:1367014/1‑138 (MQ=255)

         tATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑cccccccag                                                                                                                               <  2:1048413/140‑4 (MQ=255)

         tATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑cccccccag                                                                                                                               <  2:1324556/140‑4 (MQ=255)

           tCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑cccccccagcc                                                                                                                             >  1:741920/1‑135 (MQ=255)

           tCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑cccccccagcc                                                                                                                             <  1:195299/140‑6 (MQ=255)

           tCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑cccccccagcc                                                                                                                             >  1:1512846/1‑135 (MQ=255)

             aaaaTTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCccagccag                                                                                                                            <  2:1145289/140‑1 (MQ=255)

                  tAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGt                                                                                                                       <  1:1310198/140‑1 (MQ=255)

                   aGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTg                                                                                                                      <  1:383458/140‑1 (MQ=255)

                   aGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTg                                                                                                                      <  1:923538/140‑1 (MQ=255)

                   aGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTg                                                                                                                      <  2:650428/140‑1 (MQ=255)

                   aGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTg                                                                                                                      <  1:1064020/140‑1 (MQ=255)

                   aGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTg                                                                                                                      <  2:809801/140‑1 (MQ=255)

                    gCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGa                                                                                                                     <  1:83649/140‑1 (MQ=255)

                     cTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGAc                                                                                                                    >  1:1518196/1‑140 (MQ=255)

                        aTTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTc                                                                                                                 <  2:571518/140‑1 (MQ=255)

                        aTTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTc                                                                                                                 <  1:384505/140‑1 (MQ=255)

                          ttttAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGTCCCCCCAGCCAGCCGGTGACGTCCa                                                                                                               >  1:111482/1‑140 (MQ=255)

                              aaTGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCAc                                                                                                           <  2:649137/140‑1 (MQ=255)

                                   gACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGc                                                                                                      <  1:59532/140‑1 (MQ=255)

                                   gACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGc                                                                                                      <  2:1394590/140‑1 (MQ=255)

                                    aCTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGcc                                                                                                     >  2:984469/1‑140 (MQ=255)

                                    aCTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGcc                                                                                                     >  2:1213532/1‑140 (MQ=255)

                                    aCTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGcc                                                                                                     >  2:1227624/1‑140 (MQ=255)

                                    aCTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGcc                                                                                                     >  2:539858/1‑140 (MQ=255)

                                    aCTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGcc                                                                                                     >  1:364733/1‑140 (MQ=255)

                                        taataaTTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGCCCGCGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATg                                                                                                 <  2:1227416/140‑1 (MQ=255)

                                        taataaTTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATg                                                                                                 <  1:1325464/140‑1 (MQ=255)

                                        taataaTTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATg                                                                                                 >  2:1027689/1‑140 (MQ=255)

                                        taataaTTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATg                                                                                                 <  2:1367014/140‑1 (MQ=255)

                                            aatTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGt                                                                                             <  1:1171803/140‑1 (MQ=255)

                                            aatTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGt                                                                                             <  2:798453/140‑1 (MQ=255)

                                             atTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTa                                                                                            <  1:442845/140‑1 (MQ=255)

                                              ttttCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTAc                                                                                           <  2:31972/140‑1 (MQ=255)

                                              ttttCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTAc                                                                                           <  2:48065/140‑1 (MQ=255)

                                              ttttCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTAc                                                                                           <  2:240579/140‑1 (MQ=255)

                                              ttttCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTAc                                                                                           <  1:1322905/140‑1 (MQ=255)

                                                ttCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAg                                                                                         >  2:101151/1‑140 (MQ=255)

                                                    tCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCa                                                                                     <  1:451109/140‑1 (MQ=255)

                                                       ttAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGc                                                                                  <  2:745764/140‑1 (MQ=255)

                                                           gAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACtt                                                                              <  2:1043353/140‑1 (MQ=255)

                                                               tAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcg                                                                          <  2:775328/140‑1 (MQ=255)

                                                               tAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcg                                                                          <  1:814900/140‑1 (MQ=255)

                                                               tAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcg                                                                          >  1:696801/1‑140 (MQ=255)

                                                               tAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcg                                                                          >  1:1332094/1‑140 (MQ=255)

                                                               tAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcg                                                                          >  2:1426290/1‑140 (MQ=255)

                                                                aGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcgc                                                                         >  1:1008528/1‑140 (MQ=255)

                                                                  gTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcgcgc                                                                       >  1:437362/1‑140 (MQ=255)

                                                                  gTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTgcgcgc                                                                       >  1:664164/1‑140 (MQ=255)

                                                                        acgacTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCAt                                                                 <  2:1171040/140‑1 (MQ=255)

                                                                        acgacTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCAt                                                                 <  2:788255/140‑1 (MQ=255)

                                                                          gacTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCg                                                               <  1:283165/140‑1 (MQ=255)

                                                                          gacTTTGCTGCAATCAAATCCTGCACACAAGCCCACGCACTCGCCCACGCCGCCGGGAGGTTATAGCCCCCCCTGCCTGCCGGTGACGTCCATCTCATCGCCGTTGAAGTACCGTCCAGGCACTTTGCGCGCTTCCAtag                                                               <  2:1490642/140‑3 (MQ=255)

                                                                            cTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTc                                                             >  1:1283696/1‑140 (MQ=255)

                                                                            cTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTc                                                             >  1:1315177/1‑140 (MQ=255)

                                                                               tgctgcAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGt                                                          >  2:537207/1‑140 (MQ=255)

                                                                               tgctgcAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGt                                                          <  2:284377/140‑1 (MQ=255)

                                                                                 ctgcAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGa                                                        >  2:82305/1‑140 (MQ=255)

                                                                                    cAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAaga                                                     <  1:1048604/140‑1 (MQ=255)

                                                                                       tCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAagagag                                                  <  2:854868/140‑1 (MQ=255)

                                                                                        cAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑CCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGtt                                                <  2:341408/140‑1 (MQ=255)

                                                                                              cTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTg                                           <  1:337268/140‑1 (MQ=255)

                                                                                                 cgcACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGgtg                                        >  1:1192645/1‑140 (MQ=255)

                                                                                                 cgcACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGgtg                                        >  1:610334/1‑140 (MQ=255)

                                                                                                 cgcACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGgtg                                        >  2:786552/1‑140 (MQ=255)

                                                                                                     caAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCa                                    <  1:1426290/140‑1 (MQ=255)

                                                                                                        gCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCAcgc                                 >  1:1389458/1‑140 (MQ=255)

                                                                                                        gCCCACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCAcgc                                 >  2:1382054/1‑140 (MQ=255)

                                                                                                           cACGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCAcgccgc                              <  1:960429/140‑1 (MQ=255)

                                                                                                            aCGCACTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACgccgcc                             <  2:111524/140‑1 (MQ=255)

                                                                                                                aCTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGc                         >  1:268507/1‑140 (MQ=255)

                                                                                                                aCTCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGc                         <  2:1332094/140‑1 (MQ=255)

                                                                                                                  tCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGt                       <  2:396506/140‑1 (MQ=255)

                                                                                                                  tCGACCACGCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGt                       <  1:82305/140‑1 (MQ=255)

                                                                                                                          gCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCgg               >  2:650854/1‑140 (MQ=255)

                                                                                                                          gCCCACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCgg               <  1:405499/140‑1 (MQ=255)

                                                                                                                           cccACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGc              >  2:1075262/1‑140 (MQ=255)

                                                                                                                            ccACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGCa             <  2:741920/140‑1 (MQ=255)

                                                                                                                            ccACTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGCa             <  2:1283696/140‑1 (MQ=255)

                                                                                                                               cTGGAAGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGCAGTg          <  2:1025612/140‑1 (MQ=255)

                                                                                                                                    aGTTATAGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGCAGTGCGATa     >  2:742369/1‑140 (MQ=255)

                                                                                                                                       tataGCCCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGCAGTGCGATAGcc  <  1:984469/140‑1 (MQ=255)

GATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAGGACGACTTTGCTGCAATCAAATCCTGCGCACAAGCCCACGCACTCGACCACGCCCACTGGAAGTTATAG‑CCCCCCAGCCAGCCGGTGACGTCCATCACTTCGCCGATGAAGTACAGCCCAGGCACTTTGCGCGCTTCCATCGTCCGTGAAGAGAGTTCGTTGGTGTCCACGCCGCCGAGCGTCACTTCGGCAGTGCGATAGCC  >  NC_000913/3636141‑3636414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A