Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	138	62.6	2119710	99.4%	2106991	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,118,667	A→G	V127A (GTC→GCC)	yceJ ←	putative cytochrome b561

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,118,667	0	A	G	100.0%	237.8 / NA	63	V127A (GTC→GCC)	yceJ	putative cytochrome b561
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (32/31); total (32/31)

CGTCTTTATCGATGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGACGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGACGAGTCATGGGCG  >  NC_000913/1118530‑1118799

cgtcTTTATCGATGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCg                                                                                                                                    >  1:810082/1‑140 (MQ=255)

  tcTTTATCGATGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTc                                                                                                                                  >  1:682768/1‑140 (MQ=255)

     ttATCGATGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCaaa                                                                                                                               <  1:847765/140‑1 (MQ=255)

            tGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCa                                                                                                                        >  1:472779/1‑140 (MQ=255)

             gAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCaa                                                                                                                       >  1:456050/1‑140 (MQ=255)

                     gCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTg                                                                                                               >  1:804393/1‑140 (MQ=255)

                       ttCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGAt                                                                                                             <  2:472779/140‑1 (MQ=255)

                       ttCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGAt                                                                                                             <  1:365977/140‑1 (MQ=255)

                        tCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATc                                                                                                            >  1:256634/1‑140 (MQ=255)

                           gggCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGt                                                                                                         <  1:474799/140‑1 (MQ=255)

                                 tAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTAcga                                                                                                   >  2:719973/1‑138 (MQ=255)

                                  aaaTCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCAt                                                                                                  <  1:719973/140‑1 (MQ=255)

                                     tCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCgg                                                                                               <  2:810082/140‑1 (MQ=255)

                                     tCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCgg                                                                                               <  1:392584/140‑1 (MQ=255)

                                      ccGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGc                                                                                              >  2:159639/1‑140 (MQ=255)

                                         tGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGATTTACCATCGGCAGt                                                                                           <  2:86172/140‑1 (MQ=255)

                                             tAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTgag                                                                                       <  1:91919/140‑1 (MQ=255)

                                              aaCGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTgaga                                                                                      >  1:454487/1‑140 (MQ=255)

                                              aaCGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTgaga                                                                                      <  2:1011502/140‑1 (MQ=255)

                                                       tactacGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGc                                                                             >  2:547823/1‑140 (MQ=255)

                                                       tactacGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGc                                                                             <  1:230716/140‑1 (MQ=255)

                                                          tacGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGc                                                                          >  1:73909/1‑140 (MQ=255)

                                                           acgacgCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCt                                                                         <  2:671791/140‑1 (MQ=255)

                                                            cgacgCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTg                                                                        >  2:878996/1‑140 (MQ=255)

                                                               cgCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATg                                                                     >  1:131306/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATa                                                                               <  1:489019/128‑1 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATa                                                                               >  2:489019/1‑128 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  1:37823/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  1:1047683/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  2:769143/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  2:570405/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  2:1074/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  1:732004/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  1:600928/1‑140 (MQ=255)

                                                                 cTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGcc                                                                   >  1:795573/1‑140 (MQ=255)

                                                                     aCGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATg                                                               <  2:256634/140‑1 (MQ=255)

                                                                              aaaaaTGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGc                                                      <  2:600928/140‑1 (MQ=255)

                                                                                aaaTGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCaa                                                    <  1:547823/140‑1 (MQ=255)

                                                                                 aaTGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAAt                                                   <  1:769143/140‑1 (MQ=255)

                                                                                     cAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGTCGATGGCGAAAAGCAATAGGt                                               <  2:845657/140‑1 (MQ=255)

                                                                                     cAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGt                                               <  1:947873/140‑1 (MQ=255)

                                                                                     cAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGt                                               <  1:534399/140‑1 (MQ=255)

                                                                                     cAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGt                                               <  2:131306/140‑1 (MQ=255)

                                                                                     cAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGt                                               >  2:620238/1‑140 (MQ=255)

                                                                                          cACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAAt                                          >  2:852267/1‑140 (MQ=255)

                                                                                             cGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCg                                       <  2:1047683/140‑1 (MQ=255)

                                                                                               gCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCgag                                     <  2:601652/140‑1 (MQ=255)

                                                                                                   aGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGt                                 >  1:1038767/1‑140 (MQ=255)

                                                                                                       tGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAg                             >  2:307708/1‑140 (MQ=255)

                                                                                                         ccTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGct                           >  2:870999/1‑140 (MQ=255)

                                                                                                          cTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGctc                          <  2:37823/140‑1 (MQ=255)

                                                                                                              gcgcCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGc                      >  2:152802/1‑140 (MQ=255)

                                                                                                              gcgcCAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGc                      >  1:175615/1‑140 (MQ=255)

                                                                                                                 ccAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGc                   <  1:307708/140‑1 (MQ=255)

                                                                                                                 ccAGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGc                   <  1:152802/140‑1 (MQ=255)

                                                                                                                   aGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCaa                 >  1:437647/1‑140 (MQ=255)

                                                                                                                   aGCGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCaa                 <  1:570405/140‑1 (MQ=255)

                                                                                                                     cGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGa               >  2:881746/1‑140 (MQ=255)

                                                                                                                     cGTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGa               <  1:427323/140‑1 (MQ=255)

                                                                                                                      gTCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGAc              <  2:682768/140‑1 (MQ=255)

                                                                                                                       tCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGc                   >  1:1043074/1‑134 (MQ=255)

                                                                                                                       tCGGCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGc                   <  2:1043074/134‑1 (MQ=255)

                                                                                                                          gCAAGGGTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGACGAGt          <  2:454487/140‑1 (MQ=255)

                                                                                                                               ggTCGCGGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGACGAGTCATgg     >  1:405249/1‑140 (MQ=255)

                                                                                                                                  cgcgGGGGCGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGGTCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGACGAGTCATGGGCg  >  2:977183/1‑140 (MQ=255)

CGTCTTTATCGATGAAATGATGCTTCAGGGCCATAAATCCGTGCATAACGGACAGTACTACGACGCTCCACGCGAGCCAAAAATGCAGGGCACCGGCAAAGTCTGCCTGTGCGCCAGCGTCGGCAAGGGTCGCGGGGACGTCAAACCAGCCAAAAACGCTGATCGGTTTACCATCGGCAGTTGAGATCAGATAGCCGCTGATGCCGATGGCGAAAAGCAATAGGTACAATGCGAGATGTCCAGCTCTTGCGGCAAGACGAGTCATGGGCG  >  NC_000913/1118530‑1118799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A