Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 837,442 (A)8→7 intergenic (+6/+223) hcxB → / ← ybiJ hydroxycarboxylate dehydrogenase B/DUF1471 domain‑containing protein YbiJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913837,4350A.100.0% 317.7 / NA 73coding (1085/1086 nt)hcxBhydroxycarboxylate dehydrogenase B
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (30/43);  total (30/43)

AACACGCGTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCTAAAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATC  >  NC_000913/837302‑837564
                                                                                                                                     |                                                                                                                                 
aaCACGCGTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCTaaaaaaa                                                                                                                             >  1:845330/1‑140 (MQ=255)
 acacGCGTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCTaaaaaaag                                                                                                                            >  1:588454/1‑139 (MQ=255)
  cacGCGTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCTaaaaaaagc                                                                                                                           <  2:979109/140‑3 (MQ=255)
  cacGCGTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCTaaaaaaagc                                                                                                                           <  2:292801/140‑3 (MQ=255)
     gcgTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCg                                                                                                                       >  1:586333/1‑140 (MQ=255)
      cgTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGt                                                                                                                      <  2:1228591/140‑1 (MQ=255)
       gTCGCGAACGGCAGGAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTc                                                                                                                     <  2:595405/140‑1 (MQ=255)
       gTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTc                                                                                                                     <  2:1080787/140‑1 (MQ=255)
        tCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTcc                                                                                                                    >  1:407906/1‑140 (MQ=255)
                ggCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCgg                                                                                                            <  1:1463687/140‑1 (MQ=255)
                 gCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGGTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGa                                                                                                           <  1:775667/140‑1 (MQ=255)
                 gCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGa                                                                                                           <  2:588454/140‑1 (MQ=255)
                 gCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGa                                                                                                           <  1:217136/140‑1 (MQ=255)
                 gCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGa                                                                                                           <  1:782911/140‑1 (MQ=255)
                 gCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGa                                                                                                           <  2:1456905/140‑1 (MQ=255)
                        cAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCaa                                                                                                    <  1:1227507/140‑1 (MQ=255)
                        cAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCaa                                                                                                    <  1:1094401/140‑1 (MQ=255)
                          ggggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAc                                                                                                  <  2:1147456/140‑1 (MQ=255)
                          ggggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAc                                                                                                  <  1:965908/140‑1 (MQ=255)
                          ggggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAc                                                                                                  <  2:1290155/140‑1 (MQ=255)
                          ggggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAc                                                                                                  >  1:510594/1‑140 (MQ=255)
                          ggggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAc                                                                                                  <  2:261108/140‑1 (MQ=255)
                          ggggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAc                                                                                                  <  2:453234/140‑1 (MQ=255)
                          ggggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAc                                                                                                  <  1:210789/140‑1 (MQ=255)
                           gggATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCGGTGGCGGACGGGCAAACa                                                                                                 >  1:700822/1‑140 (MQ=255)
                               ttCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAggg                                                                                             <  2:578479/140‑1 (MQ=255)
                               ttCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAggg                                                                                             <  2:586333/140‑1 (MQ=255)
                                tCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAgggg                                                                                            >  1:470050/1‑139 (MQ=255)
                                tCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGt                                                                                            <  1:672837/140‑1 (MQ=255)
                                tCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGt                                                                                            >  1:1213956/1‑140 (MQ=255)
                                    cTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACa                                                                                        <  1:551270/140‑1 (MQ=255)
                                      ggATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATa                                                                                      <  2:1309171/140‑1 (MQ=255)
                                      ggATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATa                                                                                      >  2:1264416/1‑140 (MQ=255)
                                       gATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAg                                                                                     >  1:1180747/1‑140 (MQ=255)
                                       gATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAAAAAGGGTAACATAg                                                                                     >  1:1494909/1‑140 (MQ=255)
                                        aTGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAgg                                                                                    <  2:1223934/140‑1 (MQ=255)
                                         tGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGGAACATAGGa                                                                                   >  2:1259611/1‑140 (MQ=255)
                                          gCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGAt                                                                                  <  1:1495688/140‑1 (MQ=255)
                                          gCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGAt                                                                                  >  2:683083/1‑140 (MQ=255)
                                          gCGGGAAGCTGGCAGGCCATTTGTGAAGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGAt                                                                                  <  2:1328344/140‑1 (MQ=255)
                                            gggAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCa                                                                                >  1:821643/1‑140 (MQ=255)
                                            gggAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCa                                                                                >  1:660326/1‑140 (MQ=255)
                                               aaGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATg                                                                             <  2:1131233/140‑1 (MQ=255)
                                               aaGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATg                                                                             <  1:89238/140‑1 (MQ=255)
                                                aGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGa                                                                            <  2:848199/140‑1 (MQ=255)
                                                   tGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAAAATAGGAGCAATGAggg                                                                         >  2:55475/1‑140 (MQ=255)
                                                    ggCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGt                                                                        <  2:1270684/140‑1 (MQ=255)
                                                     gCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGtt                                                                       <  1:503896/140‑1 (MQ=255)
                                                                      cAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGt                                                      >  1:1335038/1‑140 (MQ=255)
                                                                       aGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTc                                                     >  1:726374/1‑140 (MQ=255)
                                                                        gcgcGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCg                                                    >  1:137396/1‑140 (MQ=255)
                                                                         cgcgGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCgg                                                   >  1:9249/1‑140 (MQ=255)
                                                                         cgcgGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCgg                                                   <  1:451603/140‑1 (MQ=255)
                                                                         cgcgGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCgg                                                   >  2:231449/1‑140 (MQ=255)
                                                                         cgcgGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCgg                                                   >  1:598557/1‑140 (MQ=255)
                                                                         cgcgGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAAGGTAACATATGAACAATGAAGGTTATAGCAAATGCATCTGTCgg                                                   >  2:7989/1‑140 (MQ=255)
                                                                            ggCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCaa                                                <  2:1447819/140‑1 (MQ=255)
                                                                                 aTTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAacaga                                           <  2:407906/140‑1 (MQ=255)
                                                                                 aTTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAacaga                                           <  2:845330/140‑1 (MQ=255)
                                                                                 aTTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAacaga                                           <  2:9249/140‑1 (MQ=255)
                                                                                 aTTGGTATGCCGGAAGAGACGTTGCAGACTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAacaga                                           >  2:361888/1‑140 (MQ=255)
                                                                                   tGGTATGCCGGAAGAGACGTTGCTGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAacagaca                                         <  1:99246/140‑1 (MQ=255)
                                                                                   tGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAacagaca                                         <  2:358644/140‑1 (MQ=255)
                                                                                   tGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGAACAATGAGGGGTAGAGCATATGCGTCTGTCGGCAAacagaca                                         >  1:839245/1‑140 (MQ=255)
                                                                                       aTGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGa                                     <  1:621907/140‑1 (MQ=255)
                                                                                        tGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGaa                                    >  1:946257/1‑140 (MQ=255)
                                                                                           cGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATa                                 >  1:1512210/1‑140 (MQ=255)
                                                                                                 agaCGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTtgtg                           <  2:1180747/140‑1 (MQ=255)
                                                                                                   aCGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCt                         >  1:806866/1‑140 (MQ=255)
                                                                                                      ttGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGa                      <  2:1213956/140‑1 (MQ=255)
                                                                                                       tGCAGGCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGTCCGTCCAGTGGCGGACGGGCAAACAAGGGGAACATAGGATCAATGAGGGGTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGAc                     >  2:892344/1‑140 (MQ=255)
                                                                                                           ggCTTTCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGGAACATAAGAGCAATGAGGGCTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAg                 >  2:711389/1‑140 (MQ=255)
                                                                                                              tttCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGt              >  2:564449/1‑140 (MQ=255)
                                                                                                               ttCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTa             <  2:510594/140‑1 (MQ=255)
                                                                                                               ttCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTa             <  1:28757/140‑1 (MQ=255)
                                                                                                               ttCTGTCAGCAGTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTa             <  2:946257/140‑1 (MQ=255)
                                                                                                                          gTTAGCCAGCT‑AAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGGAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGGCGTAGCGTAAAAGCCTGaac  >  2:986953/1‑138 (MQ=255)
                                                                                                                                     |                                                                                                                                 
AACACGCGTCGCGAACGGCAGAAGCAGGGGATTCCACTGGATGCGGGAAGCTGGCAGGCCATTTGTGATGCAGCGCGGCAGATTGGTATGCCGGAAGAGACGTTGCAGGCTTTCTGTCAGCAGTTAGCCAGCTAAAAAAAAGCCCGTCCAGTGGCGGACGGGCAAACAAGGGTAACATAGGATCAATGAGGGTTAGAGCATATGCGTCTGTCGGCAAACAGACAGGGAAATACTTGTGCTGGACGTAGCGTAAACGCCTGATC  >  NC_000913/837302‑837564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A