Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,064,804	A→G	T257A (ACG→GCG)	yccE →	uncharacterized protein YccE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,064,804	0	A	G	100.0%	287.7 / NA	78	T257A (ACG→GCG)	yccE	uncharacterized protein YccE
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (37/41); total (37/41)

ATTGTCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATACGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCATTGATAGT  >  NC_000913/1064667‑1064938

atTGTCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCg                                                                                                                                      <  2:1378916/140‑1 (MQ=255)

  tGTCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGc                                                                                                                                    <  2:557967/140‑1 (MQ=255)

   gTCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCa                                                                                                                                   <  2:251343/140‑1 (MQ=255)

   gTCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCa                                                                                                                                   <  2:121549/140‑1 (MQ=255)

    tCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCAt                                                                                                                                  <  1:267193/140‑1 (MQ=255)

    tCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCAt                                                                                                                                  <  2:44814/140‑1 (MQ=255)

       gTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCt                                                                                                                               >  1:883216/1‑140 (MQ=255)

             agCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAAtc                                                                                                                         >  1:499016/1‑140 (MQ=255)

              gCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACTAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCGCTTGTTGATGCGGCATTCTATAAtct                                                                                                                        <  2:1236725/140‑1 (MQ=255)

              gCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAAtct                                                                                                                        >  2:1044826/1‑140 (MQ=255)

              gCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAAtct                                                                                                                        >  2:422587/1‑140 (MQ=255)

                  taCTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAgg                                                                                                                    >  2:527926/1‑140 (MQ=255)

                  taCTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAgg                                                                                                                    >  1:753296/1‑140 (MQ=255)

                  taCTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAgg                                                                                                                    >  2:376459/1‑140 (MQ=255)

                  taCTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAgg                                                                                                                    >  2:848995/1‑140 (MQ=255)

                    cTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGa                                                                                                                  <  1:1029618/140‑1 (MQ=255)

                    cTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGa                                                                                                                  <  2:1320633/140‑1 (MQ=255)

                    cTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGa                                                                                                                  <  2:437671/140‑1 (MQ=255)

                     tGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGaa                                                                                                                 <  2:1513417/140‑1 (MQ=255)

                       gTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGa                                                                                                               >  1:203353/1‑140 (MQ=255)

                       gTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGa                                                                                                               >  1:119401/1‑140 (MQ=255)

                          ttAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGt                                                                                                            <  2:133266/140‑1 (MQ=255)

                          ttAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGt                                                                                                            <  2:590999/140‑1 (MQ=255)

                            aaaaCAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTaa                                                                                                          >  2:573259/1‑140 (MQ=255)

                             aaaCAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTaaa                                                                                                         <  1:574724/140‑1 (MQ=255)

                                caacaTGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGAc                                                                                                      <  2:419946/140‑1 (MQ=255)

                                   caTGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGATGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGtt                                                                                                   >  2:934490/1‑140 (MQ=255)

                                      gATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTAtt                                                                                                <  2:1029426/140‑1 (MQ=255)

                                         tattCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGGAGATGTAAAGACGTTATTTgg                                                                                             <  1:1209458/140‑1 (MQ=255)

                                         tattCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTgg                                                                                             <  1:217551/140‑1 (MQ=255)

                                           ttCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCg                                                                                           <  1:1275011/140‑1 (MQ=255)

                                           ttCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCg                                                                                           <  1:1523741/140‑1 (MQ=255)

                                                gggCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGAt                                                                                      <  1:770697/140‑1 (MQ=255)

                                                gggCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGAt                                                                                      >  1:207894/1‑140 (MQ=255)

                                                   cgcTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTa                                                                                   >  1:1090936/1‑140 (MQ=255)

                                                     cTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACa                                                                                 <  2:1495604/140‑1 (MQ=255)

                                                     cTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACa                                                                                 >  2:619634/1‑140 (MQ=255)

                                                        gTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATc                                                                              >  1:487923/1‑140 (MQ=255)

                                                        gTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGAACGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATc                                                                              >  2:41885/1‑140 (MQ=255)

                                                                     tGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAAtt                                                                 >  1:370526/1‑140 (MQ=255)

                                                                     tGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAAtt                                                                 >  1:1293811/1‑140 (MQ=255)

                                                                       cAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCa                                                               >  1:1132163/1‑140 (MQ=255)

                                                                       cAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCa                                                               >  2:470091/1‑140 (MQ=255)

                                                                       cAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCa                                                               >  1:1515192/1‑140 (MQ=255)

                                                                       cAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCa                                                               >  1:1017760/1‑140 (MQ=255)

                                                                           aGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAgggg                                                           <  1:1221630/140‑1 (MQ=255)

                                                                           aGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAgggg                                                           <  1:1044826/140‑1 (MQ=255)

                                                                           aGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAgggg                                                           <  2:119401/140‑1 (MQ=255)

                                                                           aGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAgggg                                                           <  2:753296/140‑1 (MQ=255)

                                                                           aGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAgggg                                                           <  2:221068/140‑1 (MQ=255)

                                                                             gAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCa                                                         <  1:1514522/140‑1 (MQ=255)

                                                                               aGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCaga                                                       <  2:767821/140‑1 (MQ=255)

                                                                               aGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCaga                                                       >  2:1184530/1‑140 (MQ=255)

                                                                               aGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCaga                                                       >  1:867515/1‑140 (MQ=255)

                                                                               aGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCaga                                                       >  2:549821/1‑140 (MQ=255)

                                                                                gTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCagag                                                      <  1:515600/140‑1 (MQ=255)

                                                                                gTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCagag                                                      <  1:819899/140‑1 (MQ=255)

                                                                                gTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCagag                                                      >  1:58136/1‑140 (MQ=255)

                                                                                     cAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTc                                                 <  2:207894/140‑1 (MQ=255)

                                                                                           aTTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGt                                           >  2:565601/1‑140 (MQ=255)

                                                                                           aTTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGt                                           >  1:221975/1‑140 (MQ=255)

                                                                                           aTTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGt                                           >  1:9239/1‑140 (MQ=255)

                                                                                                           gATAAAAAAACGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGTTCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGtt                           >  2:1503162/1‑140 (MQ=255)

                                                                                                                aaaaaCGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTa                      <  2:221975/140‑1 (MQ=255)

                                                                                                                   aaCGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTaaaa                   >  2:1260282/1‑140 (MQ=255)

                                                                                                                     cGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTaaaaaa                 <  1:1260282/140‑1 (MQ=255)

                                                                                                                     cGATCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTaaaaaa                 <  1:341813/140‑1 (MQ=255)

                                                                                                                       aTCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACa               >  1:371805/1‑140 (MQ=255)

                                                                                                                        tCGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACaa              >  1:1070154/1‑140 (MQ=255)

                                                                                                                         cGAGGCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAAt             <  2:1132163/140‑1 (MQ=255)

                                                                                                                            ggCTCTTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCa          <  2:324328/140‑1 (MQ=255)

                                                                                                                              ctctTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCAtt        >  2:1075931/1‑140 (MQ=255)

                                                                                                                              ctctTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCAtt        >  2:1445728/1‑140 (MQ=255)

                                                                                                                               tctTGTTGATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCATTg       <  2:205397/140‑1 (MQ=255)

                                                                                                                                 ttgttgATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCATTGAt     >  1:1312294/1‑140 (MQ=255)

                                                                                                                                  tgttgATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCATTGATa    <  2:1515192/140‑1 (MQ=255)

                                                                                                                                  tgttgATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCATTGATa    <  1:549821/140‑1 (MQ=255)

                                                                                                                                    ttgATGCGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCATTGATAGt  <  1:848995/140‑1 (MQ=255)

ATTGTCTGTTAAGAGCTATACTGGTTTTAAAACAACATGATTATTCATGGGCGCTGGTCAGTTATAAGATGCAAAAGGAAGTTTACAACGAATTCATTAAAATGGTTGATAAAAAAACGATCGAGGCTCTTGTTGATACGGCATTCTATAATCTCAGGGAAGATGTAAAGACGTTATTTGGCGTTGATCTACAATCTGACAACCAAATTCAGGGGCAGAGTAGTCTTATGTCATGGAGCTTTCTGTTTTTTAAAAAACAATTCATTGATAGT  >  NC_000913/1064667‑1064938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A