Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,066,190	T→C	C202C (TGT→TGC)	agp →	glucose‑1‑phosphatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,066,190	0	T	C	100.0%	264.7 / NA	72	C202C (TGT→TGC)	agp	glucose‑1‑phosphatase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (37/35); total (37/35)

CCGCCGCATTCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGTTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCAGG  >  NC_000913/1066054‑1066326

ccgccgCATTCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCg                                                                                                                                       >  2:168243/1‑140 (MQ=255)

    cgcATTCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCtgg                                                                                                                                   <  1:1212547/140‑1 (MQ=255)

       aTTCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCtggtgg                                                                                                                                <  2:771417/140‑1 (MQ=255)

        ttCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCCGCTTACCGACAGCGACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGa                                                                                                                               >  2:271153/1‑140 (MQ=255)

         tCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGAt                                                                                                                              <  1:1010940/140‑1 (MQ=255)

         tCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGAt                                                                                                                              <  1:772661/140‑1 (MQ=255)

                aCAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCaaaa                                                                                                                       >  1:216437/1‑140 (MQ=255)

                  aGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAAt                                                                                                                     >  1:902779/1‑140 (MQ=255)

                     cGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATAcc                                                                                                                  >  1:84030/1‑140 (MQ=255)

                     cGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATAcc                                                                                                                  >  1:1346258/1‑140 (MQ=255)

                     cGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATAcc                                                                                                                  >  1:307788/1‑140 (MQ=255)

                      ggTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCt                                                                                                                 <  1:1376092/140‑1 (MQ=255)

                              cAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGcc                                                                                                         >  2:1510766/1‑140 (MQ=255)

                              cAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGcc                                                                                                         <  1:1351415/140‑1 (MQ=255)

                                    agaAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGTCAAAAATACCTTTAGCGCCAAGTAt                                                                                                   <  1:233414/140‑1 (MQ=255)

                                    agaAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTAt                                                                                                   >  2:1193865/1‑140 (MQ=255)

                                        agagCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATcaac                                                                                               >  1:364285/1‑140 (MQ=255)

                                        agagCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATcaac                                                                                               <  2:92570/140‑1 (MQ=255)

                                             tCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGaa                                                                                          >  1:22968/1‑140 (MQ=255)

                                                  aaaCTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAgg                                                                                     <  1:673747/140‑1 (MQ=255)

                                                           cTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCgg                                                                            <  2:1444531/140‑1 (MQ=255)

                                                           cTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCgg                                                                            <  2:307788/140‑1 (MQ=255)

                                                              aCCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGcc                                                                         >  2:511934/1‑140 (MQ=255)

                                                                cGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGCGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGc                                                                       >  2:1467840/1‑140 (MQ=255)

                                                                cGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGc                                                                       <  1:722235/140‑1 (MQ=255)

                                                                  aCAGCTACCAGCTACTGGAAAAATTCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTg                                                                     <  1:1007703/140‑1 (MQ=255)

                                                                     gctaccagctacTGGAAAAAATCGTTAACTATAAAGATTGCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGaaa                                                                  >  2:936520/1‑140 (MQ=255)

                                                                     gctaccagctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGaaa                                                                  >  1:291578/1‑140 (MQ=255)

                                                                        accagctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTc                                                               >  2:719181/1‑140 (MQ=255)

                                                                        accagctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTc                                                               >  1:538470/1‑140 (MQ=255)

                                                                           agctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGc                                                            <  2:341625/140‑1 (MQ=255)

                                                                           agctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGc                                                            <  1:898483/140‑1 (MQ=255)

                                                                             ctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTg                                                                     >  2:694467/1‑129 (MQ=255)

                                                                             ctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTg                                                                     <  1:694467/129‑1 (MQ=255)

                                                                             ctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCaa                                                          <  1:173092/140‑1 (MQ=255)

                                                                             ctacTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGCATCAACAAGAACCAGGGGATTCCGGGCCGCTGAAAGCCGGCaa                                                          >  2:1007703/1‑140 (MQ=255)

                                                                                cTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTc                                                       >  1:215941/1‑140 (MQ=255)

                                                                                cTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTc                                                       >  2:132732/1‑140 (MQ=255)

                                                                                  ggAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTCTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGc                                                     <  2:1346258/140‑1 (MQ=255)

                                                                                   gAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCt                                                    >  1:11188/1‑140 (MQ=255)

                                                                                      aaaaTCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCC‑GGCCGCTGAAAGTCGGCAACTCGCTGGTa                                                <  1:271153/140‑1 (MQ=255)

                                                                                       aaaTCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTa                                                <  1:1193865/140‑1 (MQ=255)

                                                                                            gTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGc                                           <  2:84030/140‑1 (MQ=255)

                                                                                            gTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGc                                           <  2:436344/140‑1 (MQ=255)

                                                                                              tAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGt                                         <  2:628263/140‑1 (MQ=255)

                                                                                               aaCTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGtt                                        <  2:611657/140‑1 (MQ=255)

                                                                                                 cTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTa                                      <  2:609324/140‑1 (MQ=255)

                                                                                                        gATTCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCa                               <  1:1483971/140‑1 (MQ=255)

                                                                                                           tCCCCTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAata                            >  1:1301960/1‑140 (MQ=255)

                                                                                                            ccccTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAatat                           >  1:1245722/1‑140 (MQ=255)

                                                                                                            ccccTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAatat                           >  2:634679/1‑140 (MQ=255)

                                                                                                            ccccTGCCTGTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAatat                           >  1:1028609/1‑140 (MQ=255)

                                                                                                            ccccTGCCTGTAAAGAGAAACAACAGAGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGAAGATGCGTTTACTTTGCAatat                           >  1:1420232/1‑140 (MQ=255)

                                                                                                              cctgcctgTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTa                         >  2:872442/1‑140 (MQ=255)

                                                                                                                     gTAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGt                  <  2:291578/140‑1 (MQ=255)

                                                                                                                      tAAAGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGtt                 >  1:1239936/1‑140 (MQ=255)

                                                                                                                       aaaGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGttt                >  2:260936/1‑140 (MQ=255)

                                                                                                                       aaaGAGAAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGttt                <  2:22968/140‑1 (MQ=255)

                                                                                                                          gagaAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTcc             <  2:902779/140‑1 (MQ=255)

                                                                                                                           agaAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCg            <  1:132732/140‑1 (MQ=255)

                                                                                                                           agaAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCg            <  2:538470/140‑1 (MQ=255)

                                                                                                                            gaAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGa           >  2:836616/1‑140 (MQ=255)

                                                                                                                            gaAACAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGa           >  2:1128980/1‑140 (MQ=255)

                                                                                                                             aaaCAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGAt          >  1:167763/1‑140 (MQ=255)

                                                                                                                             aaaCAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGAt          >  1:1534799/1‑140 (MQ=255)

                                                                                                                             aaaCAACAGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGAt          <  1:1510766/140‑1 (MQ=255)

                                                                                                                             aaaCAACAGTGCTAGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGTTAGATGCGTTTACTGTGCAATATTACGAAGGTTTTCCGAt          >  2:364354/1‑140 (MQ=255)

                                                                                                                                caacaGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGa       >  1:1053694/1‑140 (MQ=255)

                                                                                                                                   caGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCCGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCa    >  1:10045/1‑140 (MQ=255)

                                                                                                                                    aGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCAg   >  1:1355654/1‑140 (MQ=255)

                                                                                                                                    aGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCAg   <  1:511934/140‑1 (MQ=255)

                                                                                                                                    aGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCAg   <  2:248911/140‑1 (MQ=255)

                                                                                                                                    aGTGCTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCAg   <  2:216437/140‑1 (MQ=255)

                                                                                                                                     gtgcTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCAgg  <  1:168243/140‑1 (MQ=255)

CCGCCGCATTCAGTGAACAGGCGGTGGCGGCAATGGAGAAAGAGCTCAGCAAACTCCAGCTTACCGACAGCTACCAGCTACTGGAAAAAATCGTTAACTATAAAGATTCCCCTGCCTGTAAAGAGAAACAACAGTGTTCGCTGGTGGATGGCAAAAATACCTTTAGCGCCAAGTATCAACAAGAACCAGGTGTTTCCGGGCCGCTGAAAGTCGGCAACTCGCTGGTAGATGCGTTTACTTTGCAATATTACGAAGGTTTTCCGATGGATCAGG  >  NC_000913/1066054‑1066326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A