Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,237,865 A→G S99G (AGC→GGC)  dadA → D‑amino acid dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,237,8650AG100.0% 237.5 / NA 67S99G (AGC→GGC) dadAD‑amino acid dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (31/36);  total (31/36)

CACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTCCGTACCG  >  NC_000913/1237728‑1238000
                                                                                                                                         |                                                                                                                                       
cACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGTGACACCGGc                                                                                                                                       <  1:1359272/140‑1 (MQ=255)
cACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGc                                                                                                                                       <  1:1111705/140‑1 (MQ=255)
cACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGc                                                                                                                                       <  2:252784/140‑1 (MQ=255)
  ccGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCa                                                                                                                                     <  2:1192729/140‑1 (MQ=255)
  ccGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCa                                                                                                                                     <  1:343931/140‑1 (MQ=255)
    gTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACt                                                                                                                                   <  1:833286/140‑1 (MQ=255)
     tGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGTGACACCGGCCACTa                                                                                                                                  >  1:1263269/1‑140 (MQ=255)
     tGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTa                                                                                                                                  >  2:921945/1‑140 (MQ=255)
     tGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTa                                                                                                                                  >  2:336428/1‑140 (MQ=255)
     ggggCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTa                                                                                                                                  <  2:1216024/139‑1 (MQ=255)
           gcACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGTATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGa                                                                                                                            <  1:1110566/140‑1 (MQ=255)
             aCCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGGACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCAATACATGGaaa                                                                                                                          >  1:873978/1‑140 (MQ=255)
                       ccTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCg                                                                                                                >  1:908923/1‑140 (MQ=255)
                       ccTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCg                                                                                                                >  2:777021/1‑140 (MQ=255)
                       ccTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCg                                                                                                                >  2:296175/1‑140 (MQ=255)
                       ccTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCg                                                                                                                >  2:1410734/1‑140 (MQ=255)
                       ccTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCg                                                                                                                >  1:1397830/1‑140 (MQ=255)
                             aaaGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGt                                                                                                          <  1:432158/140‑1 (MQ=255)
                                gCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCg                                                                                                       <  1:928605/140‑1 (MQ=255)
                                 cGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGt                                                                                                      >  1:763986/1‑140 (MQ=255)
                                  gATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTc                                                                                                     <  1:1169296/140‑1 (MQ=255)
                                  gATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTc                                                                                                     <  2:578281/140‑1 (MQ=255)
                                     tAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTgg                                                                                                  <  1:608641/140‑1 (MQ=255)
                                     tAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTgg                                                                                                  <  1:1312825/140‑1 (MQ=255)
                                     tAAATGGAAGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTAGGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATAGTGCGTCTgg                                                                                                  <  2:1402370/140‑1 (MQ=255)
                                       aaTGGATGTTCCAGCGCCTTGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTCCGTAACGGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCg                                                                                                <  2:121674/140‑1 (MQ=255)
                                       aaTGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCg                                                                                                <  1:675970/140‑1 (MQ=255)
                                              gTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGGAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACa                                                                                         >  2:391583/1‑140 (MQ=255)
                                                    gcgcCATGCGTCGCTGGCGGTTCGTCTGGTCGGTCCGCAGTCCTAGTGGAAATGGATGTGGCAAATGTTACGTCACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTg                                                                                   <  2:913616/140‑1 (MQ=255)
                                                     cgcCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGa                                                                                  >  1:331290/1‑140 (MQ=255)
                                                      gcCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGAt                                                                                 <  1:481063/140‑1 (MQ=255)
                                                      gcCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGAt                                                                                 <  1:419168/140‑1 (MQ=255)
                                                      gcCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGAt                                                                                 <  2:785064/140‑1 (MQ=255)
                                                      gcCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGAt                                                                                 <  1:1515031/140‑1 (MQ=255)
                                                       ccATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGAtt                                                                                <  1:964040/140‑1 (MQ=255)
                                                          tGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGcc                                                                             >  1:1547533/1‑140 (MQ=255)
                                                          tGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGcc                                                                             >  1:594564/1‑140 (MQ=255)
                                                          tGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTAGCGGAATACAGCCGTGATTGcc                                                                             >  1:57998/1‑140 (MQ=255)
                                                          tGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGAGCGTCTGGCGGAATACAGCCGTGATTGcc                                                                             >  1:66414/1‑140 (MQ=255)
                                                          tGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGCTGAAATGGGTGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAAGGCGGATGGTGCGTCCGGCGGAATACAGCCGCGATTGcc                                                                             >  2:481063/1‑140 (MQ=255)
                                                            cgccgcTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTg                                                                           >  2:804680/1‑140 (MQ=255)
                                                             gccgcTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGa                                                                          <  2:469629/140‑1 (MQ=255)
                                                                     cGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTg                                                                  <  2:1266848/140‑1 (MQ=255)
                                                                           gTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGcc                                                            <  1:672221/140‑1 (MQ=255)
                                                                             ctcGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGa                                                          <  1:777021/140‑1 (MQ=255)
                                                                                  cGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCa                                                     <  2:594564/140‑1 (MQ=255)
                                                                                        gCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTGCATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTc                                               <  2:873978/140‑1 (MQ=255)
                                                                                          aGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAg                                             >  2:1139499/1‑140 (MQ=255)
                                                                                            ttCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTa                                           >  1:640298/1‑140 (MQ=255)
                                                                                             tCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTAt                                          <  1:1202037/140‑1 (MQ=255)
                                                                                               cAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGa                                        >  1:1152865/1‑140 (MQ=255)
                                                                                               cAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGa                                        >  1:1069021/1‑140 (MQ=255)
                                                                                                aGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGaa                                       <  1:791835/140‑1 (MQ=255)
                                                                                                 gTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAg                                      >  1:212167/1‑140 (MQ=255)
                                                                                                 gTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAg                                      >  2:1109380/1‑140 (MQ=255)
                                                                                                      aaTGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGt                                 <  1:391583/140‑1 (MQ=255)
                                                                                                        tGGATGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCa                               <  2:908923/140‑1 (MQ=255)
                                                                                                           aTGTGGCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAggg                            >  1:1148775/1‑140 (MQ=255)
                                                                                                               ggCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTggg                        >  2:824174/1‑140 (MQ=255)
                                                                                                                gCAAATGTTACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGa                       >  1:1180159/1‑140 (MQ=255)
                                                                                                                        tACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCaa               <  1:1139499/140‑1 (MQ=255)
                                                                                                                        tACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCaa               <  1:804680/140‑1 (MQ=255)
                                                                                                                        tACGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCaa               <  1:921945/140‑1 (MQ=255)
                                                                                                                         aCGTAACTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACACTGCAAc              >  2:1161123/1‑140 (MQ=255)
                                                                                                                               cTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTcc        >  2:936068/1‑140 (MQ=255)
                                                                                                                               cTGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTcc        >  2:418191/1‑140 (MQ=255)
                                                                                                                                tGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTCCg       >  2:595500/1‑140 (MQ=255)
                                                                                                                                tGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTCCg       >  2:483862/1‑140 (MQ=255)
                                                                                                                                tGCGACACCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTCCg       >  2:201983/1‑140 (MQ=255)
                                                                                                                                  ggccacCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTCCGTa     <  2:1472131/137‑1 (MQ=255)
                                                                                                                                     cacCGGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTCCGTACCg  <  2:185666/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGAAAGCATTGCGCGCCGAAACCAATATTCAGTATGAAGGGCGTCAGGGTGGGACGCTGCAACTGTTCCGTACCG  >  NC_000913/1237728‑1238000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A