Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,588,201	A→G	G32G (GGT→GGC)	ydeR ←	putative fimbrial protein YdeR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,588,201	0	A	G	92.2%	239.8 / 5.8	77	G32G (GGT→GGC)	ydeR	putative fimbrial protein YdeR
Reads supporting (aligned to +/- strand): ref base A (4/2); new base G (41/30); total (45/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01

GACAATCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGACCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTAAAGGTTGCCG  >  NC_000913/1588065‑1588337

gACAATCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCa                                                                                                                                       <  2:779145/140‑1 (MQ=255)

gACAATCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGAAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCa                                                                                                                                       >  2:1099079/1‑140 (MQ=255)

gACAATCGGTTAATGACAAAGTAATATTGAGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGACCa                                                                                                                                       >  1:764134/1‑140 (MQ=255)

  cAATCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCAtt                                                                                                                                     <  1:1175696/140‑1 (MQ=255)

    aTCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTaa                                                                                                                                   <  2:216978/140‑1 (MQ=255)

    aTCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTaa                                                                                                                                   <  1:144755/140‑1 (MQ=255)

    aTCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGAAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTaa                                                                                                                                   <  1:1099079/140‑1 (MQ=255)

      cGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACa                                                                                                                                 <  1:63445/140‑1 (MQ=255)

          tAATGACAAAGTAATGTTGTGCCAGCCAGATGCCGAACCAGTCTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGGTAGCGTCTTTGGTTTGAATAGTGCAGGGTTTGGCGACTAGCCGGCCATTAACCGTGa                                                                                                                             >  2:1065208/1‑140 (MQ=255)

          tAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGACCATTAACAGTGa                                                                                                                             >  2:743119/1‑140 (MQ=255)

           aaTGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGAt                                                                                                                            >  1:1382221/1‑140 (MQ=255)

                      aaTAGTGTGCCAGCCAGATGCAGAACGAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGAGTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATcgg                                                                                                                 <  1:1327212/140‑1 (MQ=255)

                        tatTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATcggcg                                                                                                               <  1:431802/140‑1 (MQ=255)

                            gtgCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCt                                                                                                           >  2:784334/1‑140 (MQ=255)

                              gccagccaGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTgg                                                                                                         >  2:781383/1‑140 (MQ=255)

                              gccagccaGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTgg                                                                                                         >  2:538179/1‑140 (MQ=255)

                               ccagccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGga                                                                                                        >  2:631497/1‑140 (MQ=255)

                               ccagccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGga                                                                                                        >  2:568839/1‑140 (MQ=255)

                               ccagccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGga                                                                                                        >  1:80417/1‑140 (MQ=255)

                               ccagccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGga                                                                                                        >  1:356161/1‑140 (MQ=255)

                               ccagccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGga                                                                                                        >  1:1447784/1‑140 (MQ=255)

                                  gccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGagag                                                                                                     >  1:481016/1‑140 (MQ=255)

                                  gccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGagag                                                                                                     <  2:364494/140‑1 (MQ=255)

                                  gccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGagag                                                                                                     <  2:1358518/140‑1 (MQ=255)

                                  gccagATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGACCATTAACAGTGATAGTGACATCGGCGGCCTGGagag                                                                                                     <  2:764134/140‑1 (MQ=255)

                                              aCCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATa                                                                                         <  1:359998/140‑1 (MQ=255)

                                                  ggTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAAcgc                                                                                     >  2:742797/1‑140 (MQ=255)

                                                  ggTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGACCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAAcgc                                                                                     >  2:846344/1‑140 (MQ=255)

                                                  ggTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGCTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAAcgc                                                                                     >  2:399170/1‑140 (MQ=255)

                                                     tgttgCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACACGCa                                                                                  <  1:634564/140‑1 (MQ=255)

                                                         gCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAAc                                                                              >  2:757199/1‑140 (MQ=255)

                                                          cAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACg                                                                             <  2:1534461/140‑1 (MQ=255)

                                                          cAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACg                                                                             <  2:356161/140‑1 (MQ=255)

                                                          cAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACg                                                                             <  2:481016/140‑1 (MQ=255)

                                                          cAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACg                                                                             >  1:1349819/1‑140 (MQ=255)

                                                             aTTGCGCGTATAAAGATCCCCGAGATTAACGTTAGTTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAg                                                                          >  1:76482/1‑140 (MQ=255)

                                                                    gTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAg                                                                   >  1:1015282/1‑140 (MQ=255)

                                                                     tataAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGAGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAgg                                                                  >  1:229802/1‑140 (MQ=255)

                                                                               cccGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGCGTTGCTGTTAATAACGCGCAAAACGTAGCTAACAGGAACCTCTtgt                                                        >  2:984244/1‑140 (MQ=255)

                                                                               cccGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTtgt                                                        >  1:1207994/1‑140 (MQ=255)

                                                                                ccGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTtgtg                                                       <  1:610283/140‑1 (MQ=255)

                                                                                ccGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTtgtg                                                       <  2:279681/140‑1 (MQ=255)

                                                                                ccGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTACAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTtgtg                                                       >  1:195928/1‑140 (MQ=255)

                                                                                 cGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGa                                                      <  2:1447784/140‑1 (MQ=255)

                                                                                     aTTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTc                                                  <  2:186135/140‑1 (MQ=255)

                                                                                         aCGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTTGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCtttt                                              >  1:831264/1‑140 (MQ=255)

                                                                                         aCGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCtttt                                              >  2:124073/1‑140 (MQ=255)

                                                                                          cGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTc                                             <  1:781383/140‑1 (MQ=255)

                                                                                          cGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTc                                             <  2:1234365/140‑1 (MQ=255)

                                                                                              aGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCatat                                         >  1:356257/1‑140 (MQ=255)

                                                                                               gCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATc                                        <  1:905004/140‑1 (MQ=255)

                                                                                                   cttTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGAc                                    >  2:905519/1‑140 (MQ=255)

                                                                                                    tttGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGAct                                   >  1:1361271/1‑140 (MQ=255)

                                                                                                    tttGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGAct                                   <  1:757199/140‑1 (MQ=255)

                                                                                                    tttGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGACCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGAct                                   <  1:743119/140‑1 (MQ=255)

                                                                                                     ttGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGActc                                  >  1:183497/1‑140 (MQ=255)

                                                                                                             aaTAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGattatt                          >  2:341306/1‑140 (MQ=255)

                                                                                                             aaTAGTGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGattatt                          >  1:386510/1‑140 (MQ=255)

                                                                                                                  tGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAAt                     >  1:1140183/1‑140 (MQ=255)

                                                                                                                  tGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAAt                     >  2:234419/1‑140 (MQ=255)

                                                                                                                  tGCAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGGCTTTTCATATCTGACTCTGATTATTGAAAt                     >  2:235300/1‑140 (MQ=255)

                                                                                                                    cAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTc                   <  1:631497/140‑1 (MQ=255)

                                                                                                                    cAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTc                   <  1:784334/140‑1 (MQ=255)

                                                                                                                    cAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTc                   <  1:692096/140‑1 (MQ=255)

                                                                                                                    cAGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTc                   <  2:1382221/140‑1 (MQ=255)

                                                                                                                     aGGGTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCa                  <  2:183497/140‑1 (MQ=255)

                                                                                                                       ggTTTAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAg                >  1:1084047/1‑140 (MQ=255)

                                                                                                                         tttAGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAggg              <  2:1361271/140‑1 (MQ=255)

                                                                                                                            aGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTaa           >  1:1101024/1‑140 (MQ=255)

                                                                                                                            aGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTaa           >  2:1245668/1‑140 (MQ=255)

                                                                                                                            aGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTaa           >  1:483439/1‑140 (MQ=255)

                                                                                                                            aGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTaa           >  2:100360/1‑140 (MQ=255)

                                                                                                                            aGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTaa           >  1:331021/1‑140 (MQ=255)

                                                                                                                            aGCGACTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTaa           >  2:774838/1‑140 (MQ=255)

                                                                                                                            aGCGACTACCCGACCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTaa           >  1:568475/1‑140 (MQ=255)

                                                                                                                                aCTACCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTAAAGGt       <  1:568839/140‑1 (MQ=255)

                                                                                                                                   aCCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGGGAGCTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTAAAGGTTGc    >  1:1175606/1‑140 (MQ=255)

                                                                                                                                   aCCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTAAAGGTTGc    >  2:884346/1‑140 (MQ=255)

                                                                                                                                   aCCCGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTAAAGGTTGc    >  1:72246/1‑140 (MQ=255)

                                                                                                                                     ccGGCCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTAAAGGTTGCCg  <  1:742797/140‑1 (MQ=255)

GACAATCGGTTAATGACAAAGTAATATTGTGCCAGCCAGATGCAGAACCAGGTTGTTGCAGATTGCGCGTATAAAGATCCCCGAGATTAACGTTAGCTTCTTTGGTTTGAATAGTGCAGGGTTTAGCGACTACCCGACCATTAACAGTGATAGTGACATCGGCGGCCTGGAGAGTTGCTGTGAATAACGCGCAAAACGTAGCTAACAGGAACCTCTTGTGAAGTCTTTTCATATCTGACTCTGATTATTGAAATTCAAGGGTAAAGGTTGCCG  >  NC_000913/1588065‑1588337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A