Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,928,893 G→A intergenic (‑54/+155) ptrB ← / ← yebE oligopeptidase B/conserved inner membrane protein YebE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,928,8930GA100.0% 312.0 / NA 88intergenic (‑54/+155)ptrB/yebEoligopeptidase B/conserved inner membrane protein YebE
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (47/41);  total (47/41)

GTCCCGCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAG  >  NC_000913/1928756‑1929029
                                                                                                                                         |                                                                                                                                        
gTCCCGCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAAt                                                                                                                                        >  1:1188761/1‑140 (MQ=255)
gTCCCGCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAAt                                                                                                                                        >  2:607709/1‑140 (MQ=255)
 tCCCGCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATg                                                                                                                                       >  2:1328090/1‑140 (MQ=255)
   ccGCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCa                                                                                                                                     >  1:997572/1‑140 (MQ=255)
    cGCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCaa                                                                                                                                    <  2:1042117/140‑1 (MQ=255)
     gaaGCCAGTAGTAATTATCGACGCGTGTATCGCCATGAAGCGTCACGGTGTGGGGAATGCGTGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAATCATCTTATAAGGGTGGCAAACCTCCCCGAGAATCCAAg                                                                                                                                   <  2:1476489/138‑1 (MQ=255)
     gCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAg                                                                                                                                   <  2:1542815/140‑1 (MQ=255)
     gCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAg                                                                                                                                   <  1:462721/140‑1 (MQ=255)
       aGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCg                                                                                                                                 <  1:591589/140‑1 (MQ=255)
           agtagtAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAAc                                                                                                                             >  1:1105391/1‑140 (MQ=255)
               gtaATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAggg                                                                                                                         <  1:339960/140‑1 (MQ=255)
               gtaATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAggg                                                                                                                         <  1:1309172/140‑1 (MQ=255)
                   ttATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGt                                                                                                                     <  2:945530/140‑1 (MQ=255)
                     aTCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCa                                                                                                                   <  2:750627/140‑1 (MQ=255)
                     aTCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCa                                                                                                                   >  2:176516/1‑140 (MQ=255)
                     aTCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCa                                                                                                                   >  2:762119/1‑140 (MQ=255)
                       cGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCAtt                                                                                                                 >  1:1292312/1‑140 (MQ=255)
                       cGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCAtt                                                                                                                 >  1:360530/1‑140 (MQ=255)
                       cGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCAtt                                                                                                                 >  2:278791/1‑140 (MQ=255)
                       cGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCAtt                                                                                                                 >  2:224068/1‑140 (MQ=255)
                       cGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCAtt                                                                                                                 >  1:268774/1‑140 (MQ=255)
                       cGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCAtt                                                                                                                 >  1:1490655/1‑140 (MQ=255)
                       cGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCAtt                                                                                                                 >  1:1117669/1‑140 (MQ=255)
                          tGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCt                                                                                                              <  1:178324/140‑1 (MQ=255)
                          tGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCt                                                                                                              <  2:486365/140‑1 (MQ=255)
                          tGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCt                                                                                                              >  2:938439/1‑140 (MQ=255)
                              cgTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAga                                                                                                          <  2:699304/140‑1 (MQ=255)
                                tATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAgatg                                                                                                        >  1:602806/1‑140 (MQ=255)
                                tATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAgatg                                                                                                        >  1:1367050/1‑140 (MQ=255)
                                 aTCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAgatga                                                                                                       <  1:464909/140‑1 (MQ=255)
                                   cGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGatgatg                                                                                                     <  2:1367050/140‑1 (MQ=255)
                                   cGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGatgatg                                                                                                     <  1:1136693/140‑1 (MQ=255)
                                   cGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGatgatg                                                                                                     <  1:176516/140‑1 (MQ=255)
                                     ccATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGAc                                                                                                   <  2:1078471/140‑1 (MQ=255)
                                          aaGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTa                                                                                              <  1:273170/140‑1 (MQ=255)
                                               tCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGgc                                                                                         >  2:1188369/1‑140 (MQ=255)
                                                cATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGgcg                                                                                        <  2:840896/140‑1 (MQ=255)
                                                cATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGgcg                                                                                        <  1:363162/140‑1 (MQ=255)
                                                  tGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGcgcg                                                                                      <  1:1079914/140‑1 (MQ=255)
                                                   ggCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCgg                                                                                     <  2:69501/140‑1 (MQ=255)
                                                   ggCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCgg                                                                                     <  1:607709/140‑1 (MQ=255)
                                                    gCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGa                                                                                    >  1:1001630/1‑140 (MQ=255)
                                                        ggggAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATc                                                                                <  1:1258752/140‑1 (MQ=255)
                                                        ggggAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATc                                                                                <  1:1328090/140‑1 (MQ=255)
                                                        ggggAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAACGGCGCGGATATc                                                                                <  2:1063619/140‑1 (MQ=255)
                                                         gggAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCg                                                                               >  1:588909/1‑140 (MQ=255)
                                                         gggAATGCCGGCGGGTTTTGGTAGCATGTTATTGGTCTTTCTGGATGAAACATCATATAAGGGTGGCAAAACTCTCCGGGAATGCAAGAGAGACAGGGGAGTCATTGCTTAGATGATTCCAGGTAATGGCGCGTatatgg                                                                               >  2:385350/1‑138 (MQ=255)
                                                          ggAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGa                                                                              <  1:152916/140‑1 (MQ=255)
                                                          ggAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGa                                                                              <  1:722486/140‑1 (MQ=255)
                                                          ggAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGa                                                                              <  2:1105391/140‑1 (MQ=255)
                                                            aaTGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAAt                                                                            <  2:1011630/140‑1 (MQ=255)
                                                              tGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGt                                                                          >  2:210605/1‑140 (MQ=255)
                                                              tGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGt                                                                          >  2:1386108/1‑140 (MQ=255)
                                                               gcgggcggCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGtt                                                                         >  1:416012/1‑140 (MQ=255)
                                                                 gggcggCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTAt                                                                       >  1:470522/1‑140 (MQ=255)
                                                                  ggcggcTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATg                                                                      <  1:969345/140‑1 (MQ=255)
                                                                        ttttGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcagaca                                                                <  1:278791/140‑1 (MQ=255)
                                                                          ttGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGcagacaga                                                              <  2:604998/140‑1 (MQ=255)
                                                                          ttGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGACATCGAATGTTATGcagacaga                                                              <  1:938439/140‑1 (MQ=255)
                                                                                 cATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATc                                                       >  1:1040377/1‑140 (MQ=255)
                                                                                 cATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATc                                                       >  2:423224/1‑140 (MQ=255)
                                                                                    gTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCTAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGc                                                    <  1:240220/140‑1 (MQ=255)
                                                                                    gTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGc                                                    <  2:1292312/140‑1 (MQ=255)
                                                                                           ttctttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCa                                             >  1:740193/1‑140 (MQ=255)
                                                                                             ctttctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCaaa                                           >  1:19879/1‑140 (MQ=255)
                                                                                                tctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATgg                                        <  2:1117669/140‑1 (MQ=255)
                                                                                                tctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATgg                                        >  1:550208/1‑140 (MQ=255)
                                                                                                tctGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATgg                                        >  2:1548329/1‑140 (MQ=255)
                                                                                                   ggTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCtg                                     >  2:739899/1‑140 (MQ=255)
                                                                                                   ggTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCtg                                     >  2:338156/1‑140 (MQ=255)
                                                                                                    gTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCtgt                                    >  1:96241/1‑140 (MQ=255)
                                                                                                     ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCtgtg                                   <  1:1393593/140‑1 (MQ=255)
                                                                                                     ttGAAACATCTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCtgtg                                   <  2:1490655/140‑1 (MQ=255)
                                                                                                              cTTATAAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTgg                          >  1:394330/1‑140 (MQ=255)
                                                                                                                  taAGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAg                      >  2:775013/1‑140 (MQ=255)
                                                                                                                   aaGGGTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGc                     <  2:588909/140‑1 (MQ=255)
                                                                                                                      ggTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCg                  >  2:1520138/1‑140 (MQ=255)
                                                                                                                       gTGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGa                 >  1:1298159/1‑140 (MQ=255)
                                                                                                                        tGGCAAAACTTACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaa                >  1:1066770/1‑140 (MQ=255)
                                                                                                                        tGGCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaa                >  1:1531695/1‑140 (MQ=255)
                                                                                                                         ggCAAAACTCACCGGGAATGCAATCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGCCGCGGATAACGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa               >  2:44067/1‑140 (MQ=255)
                                                                                                                         ggCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGaaa               >  1:891431/1‑140 (MQ=255)
                                                                                                                          gCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAAt              >  1:712245/1‑140 (MQ=255)
                                                                                                                          gCAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAAt              >  2:1522878/1‑140 (MQ=255)
                                                                                                                           cAAAACTCACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACTGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATa             >  1:713056/1‑140 (MQ=255)
                                                                                                                                  cACCGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACt      <  2:268774/140‑1 (MQ=255)
                                                                                                                                    ccGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTc    >  2:49491/1‑140 (MQ=255)
                                                                                                                                    ccGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTc    <  2:294983/140‑1 (MQ=255)
                                                                                                                                    ccGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTc    >  1:428930/1‑140 (MQ=255)
                                                                                                                                    ccGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTc    >  1:1236856/1‑140 (MQ=255)
                                                                                                                                     cGGGAATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCa   >  1:1130851/1‑140 (MQ=255)
                                                                                                                                      gggaATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg  <  2:231400/140‑1 (MQ=255)
                                                                                                                                      gggaATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg  <  1:1188369/140‑1 (MQ=255)
                                                                                                                                      gggaATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg  <  2:740193/140‑1 (MQ=255)
                                                                                                                                      gggaATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg  <  2:602806/140‑1 (MQ=255)
                                                                                                                                      gggaATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAg  <  1:338156/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GTCCCGCAGCCAGTAGTAATTATCGATGCGCGTATCGCCATGAAGCGTCATGGCGTGGGGAATGCGGGCGGCTTTTGGTAGCATGTTATTGTTCTTTCTGGTTGAAACATCTTATAAGGGTGGCAAAACTCACCGGGGATGCAAGCGAAACAGGGGAGTCATTGCTTAGATGATGACAGGTAATGGCGCGGATATCGAATGTTATGCAGACAGAGAAAATCAGCCTGTTCAAATGGCTGTGCGATTCTGGATAGCCCGAAATAGTCAACTTCAG  >  NC_000913/1928756‑1929029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A