Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,166,877 C→T H404Y (CAC→TAC)  yegQ → putative peptidase YegQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,166,8770CT100.0% 224.4 / NA 66H404Y (CAC→TAC) yegQputative peptidase YegQ
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (29/37);  total (29/37)

ACCGCCAGCAGTTTGTTGGTGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGCACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCGGGGAAACCACGCGTA  >  NC_000913/2166740‑2167012
                                                                                                                                         |                                                                                                                                       
aCCGCCAGCAGTTTGTTGGTGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGtac                                                                                                                                       >  1:1100971/1‑140 (MQ=255)
aCCGCCAGCAGTTTGTTGGTGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGtac                                                                                                                                       >  2:583032/1‑140 (MQ=255)
 ccGCCAGCAGTTTGTTGGTGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGtaca                                                                                                                                      <  2:1376657/140‑1 (MQ=255)
 ccGCCAGCAGTTTGTTGGTGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGtaca                                                                                                                                      <  1:1391258/140‑1 (MQ=255)
                 ggTGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAgg                                                                                                                      <  2:364830/140‑1 (MQ=255)
                   tGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCg                                                                                                                    <  1:1076695/140‑1 (MQ=255)
                      gTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAg                                                                                                                 <  2:425075/140‑1 (MQ=255)
                       tttACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGc                                                                                                                <  2:267473/140‑1 (MQ=255)
                         tACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTa                                                                                                              >  1:1102609/1‑140 (MQ=255)
                          aCCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTAt                                                                                                             <  1:531206/140‑1 (MQ=255)
                                 aGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATa                                                                                                      >  2:526473/1‑140 (MQ=255)
                                   cgcAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGc                                                                                                    >  1:1059163/1‑140 (MQ=255)
                                   cgcAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGc                                                                                                    >  2:804472/1‑140 (MQ=255)
                                        gggggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAg                                                                                               >  2:1031316/1‑140 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTGATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  2:714823/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTTCCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  1:1474236/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  1:1508980/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  2:1022217/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  2:6056/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  2:863581/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  2:1085255/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  2:1523746/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  1:563047/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  1:1053288/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  2:246890/140‑1 (MQ=255)
                                          gggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGc                                                                                             <  1:708870/140‑1 (MQ=255)
                                           ggACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCg                                                                                            <  2:953655/140‑1 (MQ=255)
                                            gACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGa                                                                                           <  2:736680/140‑1 (MQ=255)
                                            gACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGa                                                                                           <  2:925289/140‑1 (MQ=255)
                                               cTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATgg                                                                                        <  1:1350007/140‑1 (MQ=255)
                                               cTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATgg                                                                                        <  1:324098/140‑1 (MQ=255)
                                                tCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGt                                                                                       >  1:1180432/1‑140 (MQ=255)
                                                  gcggcgGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACACCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTta                                                                                     <  1:1364841/140‑1 (MQ=255)
                                                    ggcggTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTtata                                                                                   <  2:774563/140‑1 (MQ=255)
                                                         tAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAAAATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACtgtg                                                                              >  2:963871/1‑140 (MQ=255)
                                                               tGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTc                                                                        <  2:252104/140‑1 (MQ=255)
                                                                gAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTcc                                                                       <  2:265428/140‑1 (MQ=255)
                                                                gAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTcc                                                                       <  1:1386449/140‑1 (MQ=255)
                                                                  aaaaTAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCg                                                                     >  2:1268355/1‑140 (MQ=255)
                                                                   aaataaatTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCgg                                                                    <  1:756160/140‑1 (MQ=255)
                                                                     ataaatTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTc                                                                  <  2:1102609/140‑1 (MQ=255)
                                                                          ttCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCa                                                             <  1:1424834/140‑1 (MQ=255)
                                                                           tctcCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAg                                                            >  1:437259/1‑140 (MQ=255)
                                                                               cGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATc                                                        >  1:487887/1‑140 (MQ=255)
                                                                                 ttGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCtt                                                      <  1:526473/140‑1 (MQ=255)
                                                                                    gCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAGCGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAg                                                   <  1:1425578/140‑1 (MQ=255)
                                                                                    gCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAg                                                   <  2:1215908/140‑1 (MQ=255)
                                                                                    gCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAg                                                   >  1:275139/1‑140 (MQ=255)
                                                                                         aGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCaa                                              >  2:1444654/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  2:364080/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  1:257758/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  1:448467/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  1:138852/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  2:153914/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  1:1334325/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  2:1297816/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  2:1244941/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  2:1046061/1‑140 (MQ=255)
                                                                                                     atgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCgctgct                                  >  1:906652/1‑140 (MQ=255)
                                                                                                      tgaCGCCGCAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGctgctg                                 >  1:827383/1‑140 (MQ=255)
                                                                                                          gccgcAAGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGc                             >  1:122691/1‑140 (MQ=255)
                                                                                                               aaGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAAt                        >  2:204551/1‑140 (MQ=255)
                                                                                                               aaGGCAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAAt                        >  2:1424627/1‑140 (MQ=255)
                                                                                                                   cAACATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTtct                    >  2:636459/1‑140 (MQ=255)
                                                                                                                      cATTAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCg                 >  1:602151/1‑140 (MQ=255)
                                                                                                                         tAATTTTACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCgggg              <  2:1180432/140‑1 (MQ=255)
                                                                                                                             tttACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCGGGGAAAc          <  2:448467/140‑1 (MQ=255)
                                                                                                                             tttACCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCGGGGAAAc          <  2:166307/140‑1 (MQ=255)
                                                                                                                                aCCCTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCGGGGAAACCAc       >  1:453997/1‑140 (MQ=255)
                                                                                                                                 cccTTGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCTGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCGGGGAAACCAcg      >  2:387625/1‑140 (MQ=255)
                                                                                                                                     tGAGTACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCGGGGAAACCACGCGTa  <  1:583032/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
ACCGCCAGCAGTTTGTTGGTGAGTTTACCGGTGAGCGCAAGGGGGACCTCGCGGCGGTAGCGGTGAAAAATAAATTCTCCGTTGGCGACAGCCTTGAGCTGATGACGCCGCAAGGCAACATTAATTTTACCCTTGAGCACATGGAAAACGCCAAAGGCGAAGCTATGCCGATAGCACCAGGCGATGGTTATACTGTGTGGCTCCCGGTCCCGCAGGATCTTGAGCTCAATTACGCGCTGCTGATGCGTAATTTCTCCGGGGAAACCACGCGTA  >  NC_000913/2166740‑2167012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A