Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,927,799	T→C	intergenic (+127/‑430)	ppnN → / → sdaC	nucleotide 5'‑monophosphate nucleosidase/serine:H(+) symporter SdaC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,927,799	0	T	C	97.7%	304.2 / ‑2.5	85	intergenic (+127/‑430)	ppnN/sdaC	nucleotide 5'‑monophosphate nucleosidase/serine:H(+) symporter SdaC
Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (44/39); total (45/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01

CACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTGCGC  >  NC_000913/2927666‑2927934

cACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCa                                                                                                                                   <  2:1384967/140‑1 (MQ=255)

cACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCa                                                                                                                                   <  2:131250/140‑1 (MQ=255)

cACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCa                                                                                                                                   <  2:966023/140‑1 (MQ=255)

cACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCa                                                                                                                                   >  2:552274/1‑140 (MQ=255)

 ccGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCAt                                                                                                                                  <  1:1205113/139‑1 (MQ=255)

 aCGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCAt                                                                                                                                  <  2:1408707/140‑1 (MQ=255)

 aCGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCAt                                                                                                                                  <  1:1508720/140‑1 (MQ=255)

      aTCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAAt                                                                                                                             <  1:769270/140‑1 (MQ=255)

        ctcCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAAttt                                                                                                                           >  1:1432349/1‑140 (MQ=255)

         tcCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTa                                                                                                                          <  2:242156/140‑1 (MQ=255)

          ccGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTAt                                                                                                                         >  1:583452/1‑140 (MQ=255)

           cGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATg                                                                                                                        <  1:1519711/140‑1 (MQ=255)

              tCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTg                                                                                                                     <  2:494193/140‑1 (MQ=255)

              tCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTg                                                                                                                     <  1:1140816/140‑1 (MQ=255)

                ccccGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCa                                                                                                                   >  1:137547/1‑140 (MQ=255)

                     gTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCa                                                                                                              >  2:1033355/1‑140 (MQ=255)

                         cGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACg                                                                                                          <  1:1036129/140‑1 (MQ=255)

                          gTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGt                                                                                                         >  2:1485373/1‑140 (MQ=255)

                          gTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGt                                                                                                         >  1:495982/1‑140 (MQ=255)

                                 gCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTa                                                                                                  <  2:1333317/140‑1 (MQ=255)

                                     ggTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTCATATGAATGATTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAtttt                                                                                              >  1:1176170/1‑140 (MQ=255)

                                       ttttCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCa                                                                                            <  1:1219443/140‑1 (MQ=255)

                                           ctcGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaaa                                                                                        <  2:876589/140‑1 (MQ=255)

                                           ctcGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaaa                                                                                        <  2:527035/140‑1 (MQ=255)

                                                 tttGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAt                                                                                  >  2:253259/1‑140 (MQ=255)

                                                    ggTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaaa                                                                                        >  1:530156/1‑131 (MQ=255)

                                                    ggTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaaa                                                                                        <  2:530156/131‑1 (MQ=255)

                                                         cTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGc                                                                          >  1:748129/1‑140 (MQ=255)

                                                          ttACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCt                                                                         <  2:1087524/140‑1 (MQ=255)

                                                          ttACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCt                                                                         <  1:60755/140‑1 (MQ=255)

                                                               catcaACTCATTTCATTTGTTGTATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGaa                                                                    >  1:194902/1‑140 (MQ=255)

                                                                  caACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGaaaaa                                                                 >  1:119885/1‑140 (MQ=255)

                                                                    aCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa                                                               >  1:248420/1‑140 (MQ=255)

                                                                    aCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa                                                               >  2:248422/1‑140 (MQ=255)

                                                                        atttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAAtt                                                           >  1:1478484/1‑140 (MQ=255)

                                                                        atttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAAtt                                                           >  1:22827/1‑140 (MQ=255)

                                                                              tttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGcc                                                     <  1:223909/140‑1 (MQ=255)

                                                                              tttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGcc                                                     <  2:1218773/140‑1 (MQ=255)

                                                                               ttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCa                                                    >  1:106059/1‑140 (MQ=255)

                                                                                  ttATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGa                                                 <  2:495982/140‑1 (MQ=255)

                                                                                  ttATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGa                                                 >  1:1292167/1‑140 (MQ=255)

                                                                                  ttATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGa                                                 >  2:1374064/1‑140 (MQ=255)

                                                                                    atatGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGAtt                                               >  1:1245250/1‑140 (MQ=255)

                                                                                    atatGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGAtt                                               >  2:1188698/1‑140 (MQ=255)

                                                                                      atGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTaa                                             >  2:1019036/1‑140 (MQ=255)

                                                                                            gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTaaaa                                       >  1:17452/1‑140 (MQ=255)

                                                                                            gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTaaaa                                       >  2:1434684/1‑140 (MQ=255)

                                                                                             tttCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAg                                      >  2:802552/1‑140 (MQ=255)

                                                                                                   accaccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGa                                >  2:8091/1‑140 (MQ=255)

                                                                                                   accaccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGa                                >  1:36256/1‑140 (MQ=255)

                                                                                                       cccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGAtttt                            >  2:624543/1‑140 (MQ=255)

                                                                                                       cccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGAtttt                            >  2:726602/1‑140 (MQ=255)

                                                                                                        ccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGAttttt                           >  2:952445/1‑140 (MQ=255)

                                                                                                         cTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGAtttttt                          >  1:961711/1‑140 (MQ=255)

                                                                                                         cTCACGCGACAAATATCATCACAGTTAACATGTCATAAAAGTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGAtttttt                          <  2:1176170/140‑1 (MQ=255)

                                                                                                          tCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTc                         >  2:102341/1‑140 (MQ=255)

                                                                                                             cgcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGt                      >  1:483317/1‑140 (MQ=255)

                                                                                                             cgcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGt                      >  2:1154279/1‑140 (MQ=255)

                                                                                                             cgcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGt                      <  1:1374064/140‑1 (MQ=255)

                                                                                                             cgcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGt                      <  1:402527/140‑1 (MQ=255)

                                                                                                              gcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGtt                     <  2:1432349/140‑1 (MQ=255)

                                                                                                              gcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGtt                     <  2:1095965/140‑1 (MQ=255)

                                                                                                              gcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGtt                     <  1:1378629/140‑1 (MQ=255)

                                                                                                              gcgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGtt                     <  2:748129/140‑1 (MQ=255)

                                                                                                               cgACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTc                    <  2:106059/140‑1 (MQ=255)

                                                                                                                gACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCa                   <  2:194902/140‑1 (MQ=255)

                                                                                                                 aCAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCaa                  <  2:990416/140‑1 (MQ=255)

                                                                                                                 aCAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCaa                  <  1:552274/140‑1 (MQ=255)

                                                                                                                 aCAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCaa                  <  2:137547/140‑1 (MQ=255)

                                                                                                                 aCAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCaa                  <  1:1131367/140‑1 (MQ=255)

                                                                                                                 aCAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACAGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCaa                  <  1:654156/140‑1 (MQ=255)

                                                                                                                  cAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAAc                 >  2:918803/1‑140 (MQ=255)

                                                                                                                   aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAAcc                <  1:620968/140‑1 (MQ=255)

                                                                                                                   aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAAcc                <  2:616177/140‑1 (MQ=255)

                                                                                                                   aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAAcc                <  1:1033355/140‑1 (MQ=255)

                                                                                                                          atcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACatat         >  2:37379/1‑140 (MQ=255)

                                                                                                                            cacaGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACatatat       >  2:1236295/1‑140 (MQ=255)

                                                                                                                             acaGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATAtt      >  1:992023/1‑140 (MQ=255)

                                                                                                                              caGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTg     >  1:1195246/1‑140 (MQ=255)

                                                                                                                                gTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTgcg   <  2:248420/140‑1 (MQ=255)

                                                                                                                                gTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTgcg   >  1:672746/1‑140 (MQ=255)

                                                                                                                                 ttAACATGTCATACAATTTGTGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTgcgc  >  2:1508327/1‑140 (MQ=255)

                                                                                                                                 ttAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTgcgc  >  2:602826/1‑140 (MQ=255)

                                                                                                                                 ttAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTgcgc  >  1:539427/1‑140 (MQ=255)

                                                                                                                                 ttAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTgcgc  >  1:1529329/1‑140 (MQ=255)

CACGTAATCTCCGCTCCCCCGGTGACGTTTGTTGCCGGGTTTTCTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGATTAACTAAAAGTATTGATTTTTTCAGTTCAACCTACATATATTGCGC  >  NC_000913/2927666‑2927934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A