Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,977,716	A→G	V395A (GTT→GCT)	lysA ←	diaminopimelate decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,977,716	0	A	G	100.0%	375.2 / NA	101	V395A (GTT→GCT)	lysA	diaminopimelate decarboxylase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/59); total (42/59)

Only 100 of 105 total aligned reads displayed.

TCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTG  >  NC_000913/2977580‑2977852

tCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCtt                                                                                                                                       <  1:837502/140‑1 (MQ=255)

tCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCtt                                                                                                                                       <  2:686540/140‑1 (MQ=255)

   gtgtCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTg                                                                                                                                    >  2:199350/1‑140 (MQ=255)

   gtgtCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTg                                                                                                                                    >  1:1374397/1‑140 (MQ=255)

    tgtCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTgg                                                                                                                                   >  2:1069425/1‑140 (MQ=255)

     gtCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGt                                                                                                                                  <  2:1250708/140‑1 (MQ=255)

         aCTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACa                                                                                                                              >  2:1504460/1‑140 (MQ=255)

         aCTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACa                                                                                                                              >  2:1052490/1‑140 (MQ=255)

            ccGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCg                                                                                                                           <  1:1419939/140‑1 (MQ=255)

              gTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGa                                                                                                                         >  1:1100583/1‑140 (MQ=255)

              gTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGa                                                                                                                         >  1:1175714/1‑140 (MQ=255)

               tCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGAc                                                                                                                        <  1:1326602/140‑1 (MQ=255)

                cGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACg                                                                                                                       <  2:925549/140‑1 (MQ=255)

                cGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACg                                                                                                                       >  2:1416592/1‑140 (MQ=255)

                cGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACg                                                                                                                       <  1:1504460/140‑1 (MQ=255)

                 gCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACgg                                                                                                                      <  2:147949/140‑1 (MQ=255)

                 gCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACgg                                                                                                                      <  2:804812/140‑1 (MQ=255)

                 gCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACAGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACgg                                                                                                                      <  2:46907/140‑1 (MQ=255)

                  cTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGc                                                                                                                     <  2:1030618/140‑1 (MQ=255)

                    ggAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTa                                                                                                                   <  2:128409/140‑1 (MQ=255)

                     ggggCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCGTCGACGGACTGGCGACGGCGACTCAACCGCGCCTGACCCTTATCAAACAGAGCATCTGGTAACAGCGGACGGCTAt                                                                                                                  >  2:544655/3‑140 (MQ=255)

                     gAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTAt                                                                                                                  >  1:1097688/1‑140 (MQ=255)

                      aGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTAtt                                                                                                                 <  1:315437/140‑1 (MQ=255)

                       ggCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTg                                                                                                                >  1:130741/1‑140 (MQ=255)

                        gCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGt                                                                                                               <  2:320099/140‑1 (MQ=255)

                               atcatGCAACCAGCGACTAACCGTAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGa                                                                                                        <  2:1497543/140‑1 (MQ=255)

                               atcatGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGa                                                                                                        <  2:1352297/140‑1 (MQ=255)

                               atcatGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGa                                                                                                        <  1:749153/140‑1 (MQ=255)

                               atcatGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGa                                                                                                        >  1:364740/1‑140 (MQ=255)

                               atcatGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGACTATTGTAGTTGGa                                                                                                        >  1:68341/1‑140 (MQ=255)

                                 catGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCTATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATg                                                                                                      >  2:1135819/1‑140 (MQ=255)

                                        ccAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGa                                                                                               >  1:370831/1‑140 (MQ=255)

                                        ccAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGa                                                                                               >  1:1437215/1‑140 (MQ=255)

                                        ccAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGCTGGATGACATTGa                                                                                               >  2:607839/1‑140 (MQ=255)

                                         cAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGAt                                                                                              >  2:321771/1‑140 (MQ=255)

                                         cAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGAt                                                                                              <  1:717233/140‑1 (MQ=255)

                                         cAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGAt                                                                                              >  1:1404711/1‑140 (MQ=255)

                                          aGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATg                                                                                             <  1:1135819/140‑1 (MQ=255)

                                          aGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATg                                                                                             <  1:692457/140‑1 (MQ=255)

                                          aGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATg                                                                                             <  1:602258/140‑1 (MQ=255)

                                           gCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATgc                                                                                            >  1:530897/1‑140 (MQ=255)

                                                 aaCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCata                                                                                      <  1:686154/140‑1 (MQ=255)

                                                 aaCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCata                                                                                      <  1:1347210/140‑1 (MQ=255)

                                                 aaCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCata                                                                                      <  1:455398/140‑1 (MQ=255)

                                                 aaCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCata                                                                                      <  1:1378903/140‑1 (MQ=255)

                                                 aaCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCata                                                                                      <  1:1235308/140‑1 (MQ=255)

                                                 aaCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCata                                                                                      <  1:299744/140‑1 (MQ=255)

                                                  aCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCatat                                                                                     <  1:436811/140‑1 (MQ=255)

                                                  aCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCatat                                                                                     >  2:225499/1‑140 (MQ=255)

                                                  aCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCatat                                                                                     >  2:265944/1‑140 (MQ=255)

                                                  aCCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCatat                                                                                     >  2:443118/1‑140 (MQ=255)

                                                   ccGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATg                                                                                    <  2:1523902/140‑1 (MQ=255)

                                                     gCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGcc                                                                                  >  2:282248/1‑140 (MQ=255)

                                                     gCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGcc                                                                                  <  2:1489667/140‑1 (MQ=255)

                                                      cAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGccc                                                                                 >  1:657072/1‑140 (MQ=255)

                                                      cAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGccc                                                                                 <  2:130741/140‑1 (MQ=255)

                                                      cAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGccc                                                                                 <  1:1176410/140‑1 (MQ=255)

                                                       aGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGcccc                                                                                >  2:1108704/1‑140 (MQ=255)

                                                           aaaGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTa                                                                            <  1:1527471/140‑1 (MQ=255)

                                                             aGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATc                                                                          >  1:891612/1‑140 (MQ=255)

                                                                aaTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAATAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATg                                                                       <  2:551619/140‑1 (MQ=255)

                                                                aaTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATg                                                                       <  1:1545068/140‑1 (MQ=255)

                                                                aaTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATg                                                                       <  1:1052490/140‑1 (MQ=255)

                                                                aaTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATg                                                                       <  1:1069425/140‑1 (MQ=255)

                                                                aaTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATg                                                                       <  1:107813/140‑1 (MQ=255)

                                                                aaTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATg                                                                       <  1:1442929/140‑1 (MQ=255)

                                                                aaTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATg                                                                       <  1:858626/140‑1 (MQ=255)

                                                                 aTTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGc                                                                      >  2:1306339/1‑140 (MQ=255)

                                                                     cAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTa                                                                  <  1:581533/140‑1 (MQ=255)

                                                                      aGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTAc                                                                 <  2:1374397/140‑1 (MQ=255)

                                                                      aGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTAc                                                                 <  2:628600/140‑1 (MQ=255)

                                                                       gcgcCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTAcc                                                                >  1:1342470/1‑140 (MQ=255)

                                                                             gTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCCTCTGGCAACAGCGGACGGCTAATGTAGTTCGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGAACCAGATaa                                                          >  2:659130/1‑140 (MQ=255)

                                                                                 ttcttcGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCAc                                                      <  1:255255/140‑1 (MQ=255)

                                                                                     tcGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGc                                                  >  2:1178826/1‑140 (MQ=255)

                                                                                        aTGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATGATGCAGTACCAGATAATCACCTGCCtt                                               >  2:1490389/1‑140 (MQ=255)

                                                                                            tCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACt                                           >  1:919307/1‑140 (MQ=255)

                                                                                            tCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACt                                           >  1:1019456/1‑140 (MQ=255)

                                                                                                       cGAATCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgc                                >  1:935689/1‑140 (MQ=255)

                                                                                                         aaTCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCGCCTGCCGTCTCTTCCGGCAAGgcgc                              <  2:1404711/140‑1 (MQ=255)

                                                                                                         aaTCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGgcgc                              <  2:1100583/140‑1 (MQ=255)

                                                                                                          aTCAACCGCGCCTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGcgcg                             <  2:530897/140‑1 (MQ=255)

                                                                                                                     cTGTCCATTATCAAACAGAGCGTCTGGGAACAGCGGACGGCTATTGTTGTTGGATGACATTGATGCGCCTTTGGGCCGTGTATCATGCATTTCCAGATGATCGCCCGCCTTGACTACCGGCAAGGCGCGGGTTTCAACAt                  <  2:1097688/140‑1 (MQ=255)

                                                                                                                     cTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAt                  <  2:1437215/140‑1 (MQ=255)

                                                                                                                     cTGACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAt                  <  2:807470/140‑1 (MQ=255)

                                                                                                                       gACCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACAttt                >  1:1002590/1‑140 (MQ=255)

                                                                                                                        aCCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTc               <  1:98088/140‑1 (MQ=255)

                                                                                                                        aCCATTATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTc               <  1:364827/140‑1 (MQ=255)

                                                                                                                             tATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCt          >  1:1200993/1‑140 (MQ=255)

                                                                                                                             tATCAAACAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCt          >  1:462696/1‑140 (MQ=255)

                                                                                                                                  aaCAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctg     >  1:40080/1‑140 (MQ=255)

                                                                                                                                  aaCAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctg     <  1:282248/140‑1 (MQ=255)

                                                                                                                                   aCAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATGATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgc    <  1:1490389/140‑1 (MQ=255)

                                                                                                                                   aCAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgc    <  2:370831/140‑1 (MQ=255)

                                                                                                                                   aCAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgc    <  1:265944/140‑1 (MQ=255)

                                                                                                                                   aCAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgc    >  2:1085312/1‑140 (MQ=255)

                                                                                                                                    cAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgct   >  1:979783/1‑140 (MQ=255)

                                                                                                                                    cAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgct   >  2:28723/1‑140 (MQ=255)

                                                                                                                                    cAGAGCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgct   >  2:860240/1‑140 (MQ=255)

                                                                                                                                     agagCTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCctgctg  <  2:657072/140‑1 (MQ=255)

TCAGTGTCAACTCCGTCGCTGGAGGCAAGTCATCATGCAACCAGCGACTAACCGCAGTTAAAGCAATTCCAGCGCCAGTAATTCTTCGATGGTCTGGCGACGGCGAATCAACCGCGCCTGACCATTATCAAACAGAACTTCTGGTAACAGCGGACGGCTATTGTAGTTGGATGACATTGATGCGCCATATGCCCCTGTATCATGCAGTACCAGATAATCACCTGCCTTCACTTCCGGCAAGGCGCGGGTTTCAACATTTCCCCCTTCCTGCTG  >  NC_000913/2977580‑2977852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A