Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,028,144 A→G T342A (ACC→GCC)  ghxQ → guanine/hypoxanthine transporter GhxQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,028,1440AG100.0% 353.9 / NA 94T342A (ACC→GCC) ghxQguanine/hypoxanthine transporter GhxQ
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (42/52);  total (42/52)

CCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAACCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGAAGCTG  >  NC_000913/3028008‑3028278
                                                                                                                                        |                                                                                                                                      
ccAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCg                                                                                                                                     <  1:924695/140‑1 (MQ=255)
ccAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCg                                                                                                                                     <  1:23060/140‑1 (MQ=255)
    atcatcAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAAc                                                                                                                                 <  1:693914/140‑1 (MQ=255)
    atcatcAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAAc                                                                                                                                 >  2:828645/1‑140 (MQ=255)
    atcatcAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAAc                                                                                                                                 <  1:969339/140‑1 (MQ=255)
           aCGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTg                                                                                                                          >  2:758339/1‑140 (MQ=255)
           aCGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGACGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGCAAAACAGGTTTAGCCGCCATCGttttg                                                                                                                          >  2:872652/1‑136 (MQ=255)
            cggcggCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTgg                                                                                                                         <  2:1128909/140‑1 (MQ=255)
             ggcggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCCGCGCCCGCAGCGGTTTATATCGAATCAGCGGCCGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggg                                                                                                                        <  2:551674/140‑1 (MQ=255)
             ggcggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggg                                                                                                                        <  1:54777/140‑1 (MQ=255)
             ggcggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggg                                                                                                                        <  2:312670/140‑1 (MQ=255)
             ggcggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggg                                                                                                                        <  2:551683/140‑1 (MQ=255)
             ggcggcAAAGCCCTGACCAGTGACTAAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggg                                                                                                                        <  2:1002203/140‑1 (MQ=255)
              gcggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTgggg                                                                                                                       >  1:1073443/1‑140 (MQ=255)
               cggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggggg                                                                                                                      <  2:820963/140‑1 (MQ=255)
               cggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggggg                                                                                                                      >  2:812358/1‑140 (MQ=255)
               cggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggggg                                                                                                                      >  1:1473426/1‑140 (MQ=255)
               cggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggggg                                                                                                                      >  1:9802/1‑140 (MQ=255)
               cggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggggg                                                                                                                      >  2:1229776/1‑140 (MQ=255)
               cggcAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTggggg                                                                                                                      >  2:718149/1‑140 (MQ=255)
                  cAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGt                                                                                                                   >  2:1010624/1‑140 (MQ=255)
                  cAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAAACGTAGAGGGGGCgg                                                                                                                   >  2:1377540/1‑139 (MQ=255)
                                gTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAAtt                                                                                                     <  1:1508491/140‑1 (MQ=255)
                                gTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAAtt                                                                                                     <  2:1048193/140‑1 (MQ=255)
                                 tGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTc                                                                                                    >  1:1173860/1‑140 (MQ=255)
                                 tGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTc                                                                                                    >  1:1257701/1‑140 (MQ=255)
                                 tGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTc                                                                                                    >  1:323201/1‑140 (MQ=255)
                                 tGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTc                                                                                                    >  2:1252480/1‑140 (MQ=255)
                                 tGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTc                                                                                                    >  1:1304230/1‑140 (MQ=255)
                                 tGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTc                                                                                                    >  1:1340611/1‑140 (MQ=255)
                                       aGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGtttt                                                                                              >  2:593151/1‑140 (MQ=255)
                                           aGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGGAGTGGGGGCGTTTTTCCTGTTAATTCTGTTTTTAtt                                                                                          >  2:18615/1‑139 (MQ=255)
                                           aGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCACCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATc                                                                                          >  1:286417/1‑140 (MQ=255)
                                              tCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCAcc                                                                                       >  2:471753/1‑140 (MQ=255)
                                               cAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCg                                                                                      <  1:934849/140‑1 (MQ=255)
                                                 atatTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCt                                                                                    <  1:812358/140‑1 (MQ=255)
                                                       tcCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCAtt                                                                              >  1:1140842/1‑140 (MQ=255)
                                                       tcCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCAtt                                                                              >  1:468789/1‑140 (MQ=255)
                                                          ggCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCAttttt                                                                           <  1:718149/140‑1 (MQ=255)
                                                            ccTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGa                                                                         >  2:1315950/1‑140 (MQ=255)
                                                            ccTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCAAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGATTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTATGTTTTTATAACCGATGTCATTTTTGa                                                                         >  2:1321951/1‑140 (MQ=255)
                                                               ggtggGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATcc                                                                      <  2:984868/140‑1 (MQ=255)
                                                               ggtggGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATcc                                                                      <  1:872652/140‑1 (MQ=255)
                                                               ggtggGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATcc                                                                      <  1:753791/140‑1 (MQ=255)
                                                               ggtggGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATcc                                                                      <  1:758339/140‑1 (MQ=255)
                                                                gtggGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATccc                                                                     >  1:132800/1‑140 (MQ=255)
                                                                gtggGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATccc                                                                     >  1:1248380/1‑140 (MQ=255)
                                                                     cgcAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGtt                                                                >  2:1423701/1‑140 (MQ=255)
                                                                     cgcAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGCTTTTATCACCGCTGTCATTTTTGATCCCTGGtt                                                                >  2:1235709/1‑140 (MQ=255)
                                                                      gcAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTa                                                               <  2:9802/140‑1 (MQ=255)
                                                                       cAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTAc                                                              >  1:304676/1‑140 (MQ=255)
                                                                        aGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACg                                                             >  1:60300/1‑140 (MQ=255)
                                                                          cgcCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGcc                                                           >  1:720515/1‑140 (MQ=255)
                                                                          cgcCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGcc                                                           >  2:1078089/1‑140 (MQ=255)
                                                                           gcCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCa                                                          <  2:1209140/140‑1 (MQ=255)
                                                                            cccGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCAc                                                         <  2:1035043/140‑1 (MQ=255)
                                                                            cccGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCAc                                                         <  1:288221/140‑1 (MQ=255)
                                                                                 aGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCAc                                                    <  2:1473426/140‑1 (MQ=255)
                                                                                 aGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCAc                                                    <  1:291114/140‑1 (MQ=255)
                                                                                 aGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCAc                                                    <  1:1248187/140‑1 (MQ=255)
                                                                                 aGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCAc                                                    <  1:1377540/140‑1 (MQ=255)
                                                                                    ggTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCg                                                 <  2:1173860/140‑1 (MQ=255)
                                                                                    ggTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCg                                                 <  1:809173/140‑1 (MQ=255)
                                                                                      tttATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGct                                               <  2:60300/140‑1 (MQ=255)
                                                                                         atatCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTg                                            <  2:1073443/140‑1 (MQ=255)
                                                                                         atatCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTg                                            <  1:425084/140‑1 (MQ=255)
                                                                                         atatCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTg                                            <  1:1010624/140‑1 (MQ=255)
                                                                                         atatCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTg                                            <  1:1315950/140‑1 (MQ=255)
                                                                                          tatCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGa                                           <  2:950186/140‑1 (MQ=255)
                                                                                          tatCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGa                                           <  1:917219/140‑1 (MQ=255)
                                                                                          tatCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCATTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGa                                           <  2:312090/140‑1 (MQ=255)
                                                                                               aaTCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTAc                                      >  1:906899/1‑140 (MQ=255)
                                                                                               aaTCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTAc                                      >  1:250851/1‑140 (MQ=255)
                                                                                               aaTCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCCGGTTACGCCACTGCACCCGCTCTGATGTAc                                      >  1:220874/1‑140 (MQ=255)
                                                                                                aTCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACg                                     >  2:1101164/1‑140 (MQ=255)
                                                                                                aTCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACg                                     <  1:828645/140‑1 (MQ=255)
                                                                                                aTCAGCGGCAGGAACCACCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACg                                     >  1:602154/1‑140 (MQ=255)
                                                                                                     cGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGt                                >  1:711449/1‑140 (MQ=255)
                                                                                                       gCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGttt                              >  1:732398/1‑140 (MQ=255)
                                                                                                        cAGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTg                             <  2:33888/140‑1 (MQ=255)
                                                                                                         aGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGc                            <  2:304676/140‑1 (MQ=255)
                                                                                                         aGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGc                            <  2:286417/140‑1 (MQ=255)
                                                                                                         aGGAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGc                            <  1:1252480/140‑1 (MQ=255)
                                                                                                         aGGAACCGCCGCCAGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGc                            <  1:353773/140‑1 (MQ=255)
                                                                                                           gAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTg                          <  1:979460/140‑1 (MQ=255)
                                                                                                           gAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTg                          <  1:1300728/140‑1 (MQ=255)
                                                                                                           gAACCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTg                          <  1:1229776/140‑1 (MQ=255)
                                                                                                             aCCGCCGCCGGGGGTAATACAGGTTTAGCCGCATCCGTAGTGGGGGCGTTGTTCCTGTTAATTCTGTTTTTATCACCGCTTTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGAGGTACGTAGGTTTGCTGAt                        <  2:913869/140‑1 (MQ=255)
                                                                                                             aCCGCCGCCGGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGAt                        <  1:1285345/140‑1 (MQ=255)
                                                                                                              ccgccgccgGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATg                       <  1:1423701/140‑1 (MQ=255)
                                                                                                              ccgccgccgGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATg                       <  2:1140842/140‑1 (MQ=255)
                                                                                                                 ccgccgGGGGTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTa                    >  2:616452/1‑140 (MQ=255)
                                                                                                                      gggggTAAAACAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTaa               >  2:111063/1‑140 (MQ=255)
                                                                                                                            aaaaCAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGtctc         >  2:835365/1‑140 (MQ=255)
                                                                                                                              aaCAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGa       <  2:1257701/140‑1 (MQ=255)
                                                                                                                               aCAGGTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGaa      >  2:1056380/1‑140 (MQ=255)
                                                                                                                                  ggTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGAAGCt   <  2:906899/140‑1 (MQ=255)
                                                                                                                                  ggTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGAAGCt   >  1:151320/1‑140 (MQ=255)
                                                                                                                                   gTTTAGCCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGAAGCTg  >  1:789980/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CCAGATCATCAACGGCGGCAAAGCCCTGACCAGTGACTCAGTAAGTTCAATATTCTCCGGCCTGGTGGGCGCAGCGCCCGCAGCGGTTTATATCGAATCAGCGGCAGGAACCGCCGCCGGGGGTAAAACAGGTTTAACCGCAACCGTAGTGGGGGCGTTATTCCTGTTAATTCTGTTTTTATCACCGCTGTCATTTTTGATCCCTGGTTACGCCACTGCACCCGCTCTGATGTACGTAGGTTTGCTGATGTTAAGTAACGTCTCGAAGCTG  >  NC_000913/3028008‑3028278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A