Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I1 R1
|
162 |
93.0 |
3098984 |
99.0% |
3067994 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,445,283 |
T→C |
A105A (GCA→GCG) |
rplR ← |
50S ribosomal subunit protein L18 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,445,283 | 0 | T | C | 99.0%
| 369.3
/ ‑4.7
| 100 | A105A (GCA→GCG) | rplR | 50S ribosomal subunit protein L18 |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (44/55); total (44/56) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-01 |
Only 100 of 106 total aligned reads displayed.
ACCACCTTTAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGTGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAGTTGTT > NC_000913/3445146‑3445419
|
accaccTTTAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAgcgc > 1:795646/1‑140 (MQ=255)
ccaccTTTAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGcc < 1:386745/140‑1 (MQ=255)
cTTTAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGa > 1:1020053/1‑140 (MQ=255)
cTTTAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGa < 1:851951/140‑1 (MQ=255)
cTTTAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGa < 2:1191408/140‑1 (MQ=255)
tttAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGac < 1:31144/140‑1 (MQ=255)
ttAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTGCACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGaca < 1:1111442/140‑1 (MQ=255)
ttAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGaca < 2:861724/140‑1 (MQ=255)
cGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGAc < 2:352714/140‑1 (MQ=255)
gTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCa < 1:523742/140‑1 (MQ=255)
gTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCa < 1:19216/140‑1 (MQ=255)
ttttAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCAt < 1:157611/140‑1 (MQ=255)
tttAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATg > 1:109701/1‑140 (MQ=255)
tttAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATg < 2:374550/140‑1 (MQ=255)
tttAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATg > 2:576128/1‑140 (MQ=255)
tttAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATg > 1:212639/1‑140 (MQ=255)
aTACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATAtt < 2:330851/140‑1 (MQ=255)
aTACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATAtt < 1:1062113/140‑1 (MQ=255)
tACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTg < 1:469742/140‑1 (MQ=255)
tACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTg < 1:950911/140‑1 (MQ=255)
cgcgGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGa > 2:102350/1‑140 (MQ=255)
gcgGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGaa > 1:1492089/1‑140 (MQ=255)
gcgGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGaa > 2:496442/1‑140 (MQ=255)
gcgGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGaa > 1:1173768/1‑140 (MQ=255)
gcgGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGaa > 1:1175877/1‑140 (MQ=255)
tttCCCGCGATCAGCTATTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCGTCTTACTCCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGGCCATGATATTGGAACCCg < 2:1188683/140‑1 (MQ=255)
ttACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCgg < 2:968589/140‑1 (MQ=255)
tACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGa < 1:712003/140‑1 (MQ=255)
gccGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGAGGGGAGCCATCTTACCCCTCTAGCTTAGACCTAAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGATCCCGGaa < 2:301819/139‑1 (MQ=255)
aCCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGaa < 2:68331/140‑1 (MQ=255)
aCCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGaa < 2:543197/140‑1 (MQ=255)
aCCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGaa < 2:516534/140‑1 (MQ=255)
aCCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGaa < 1:81849/140‑1 (MQ=255)
ccGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAAc < 1:18228/140‑1 (MQ=255)
cgATCAGCTTTTCCTGCTGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTTCCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGt < 1:1546416/140‑1 (MQ=255)
gATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTc < 2:212639/140‑1 (MQ=255)
gATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTc < 1:1407952/140‑1 (MQ=255)
aTCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCa < 2:238040/140‑1 (MQ=255)
aTCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCa < 2:123598/140‑1 (MQ=255)
tCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCaa > 1:402939/1‑140 (MQ=255)
cAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCaaa < 1:148375/140‑1 (MQ=255)
aGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAg > 2:1139051/1‑140 (MQ=255)
tCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACa > 1:1219393/1‑140 (MQ=255)
ccTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGCCAAAGGATACAt > 1:1325460/1‑140 (MQ=255)
cAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCttt > 2:1087815/1‑140 (MQ=255)
gTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGa < 2:1477373/140‑1 (MQ=255)
gTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGa < 2:1250503/140‑1 (MQ=255)
gTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGa > 1:376909/1‑140 (MQ=255)
gTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGa > 1:562482/1‑140 (MQ=255)
gTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGa < 2:580736/140‑1 (MQ=255)
gTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTT‑GAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGAt > 1:1415144/1‑140 (MQ=255)
ttCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGAt > 1:62317/1‑140 (MQ=255)
tCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATg < 1:576128/140‑1 (MQ=255)
cGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGc > 2:303088/1‑140 (MQ=255)
gCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATGGGAACCCGGAACGGTCAAAGGATACATCTTTGATGcc > 1:1230248/1‑140 (MQ=255)
gCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGACTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGcc < 2:701085/140‑1 (MQ=255)
cTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCttttt > 2:28625/1‑140 (MQ=255)
tttCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCagag < 1:341186/140‑1 (MQ=255)
tCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAgcg < 2:1020053/140‑1 (MQ=255)
aTGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGt > 1:1014129/1‑140 (MQ=255)
aTGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGt > 1:1217928/1‑140 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGTGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGa < 2:76000/140‑1 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGa < 1:114307/140‑1 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGa < 1:1139051/140‑1 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGa < 1:1096830/140‑1 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGa < 1:730468/140‑1 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGa < 2:1175877/140‑1 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGa < 1:545005/140‑1 (MQ=255)
ccATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTAACGTGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAGCGGTCAAAGGATACATCTTTGATGTCTTTTTCCAGAGCGCGTTCAGCGa < 2:463885/140‑1 (MQ=255)
cTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGc > 2:633762/1‑140 (MQ=255)
ttACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCt < 2:731530/140‑1 (MQ=255)
ccTCTACCAACGAAGCGAAGGCCAGCTTGACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATGCATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTAcc < 2:861242/140‑1 (MQ=255)
tctACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCca < 2:799152/140‑1 (MQ=255)
ctACCTTAGAACTGAAGGTCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcac > 1:457510/1‑140 (MQ=255)
ctACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcac > 2:907949/1‑140 (MQ=255)
ctACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcac > 1:813668/1‑140 (MQ=255)
ctACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcac > 2:5960/1‑140 (MQ=255)
ctACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcac > 1:1138836/1‑140 (MQ=255)
ctACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcac > 2:818961/1‑140 (MQ=255)
ctACCTTAGAACTGAAGGCCAACTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcac > 2:914043/1‑140 (MQ=255)
tACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcaca > 2:293584/1‑140 (MQ=255)
tACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCcaca > 1:1198364/1‑140 (MQ=255)
gAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAg > 1:215174/1‑140 (MQ=255)
gAAGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCcgcg < 1:97784/140‑1 (MQ=255)
aaGGCCAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGt > 2:773901/1‑140 (MQ=255)
aaGGCCAGATTCACGGGCAGCATCTGCCAGCGCCTGGACCCGACCATGATATTGGAACCCGGAGCGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCcgcgg > 2:583846/1‑139 (MQ=255)
aGGCCACCATCTCGGGCGGCATCTCCTAGCGCCGGGACACGACCATGATATTGGACCCCGGAACGGTCAAAGGATGCATCTTTGATGCCTTTTTCCAGAGCGCGTTCACCGACAGCTTTACCCACAGCTGCAGCCGCGTc < 2:429306/140‑1 (MQ=255)
cAGCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTg > 1:333044/1‑140 (MQ=255)
gCTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGCCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGtt < 2:1325460/140‑1 (MQ=255)
cTTCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTa > 1:521804/1‑140 (MQ=255)
ttCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGATCCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTAc < 1:515379/140‑1 (MQ=255)
ttCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATGCATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTTCCCACAGCTGCAGCCGCGTCTTTGTTAc < 1:985536/140‑1 (MQ=255)
ttCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTAc < 2:456683/140‑1 (MQ=255)
ttCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTAc < 2:1219393/140‑1 (MQ=255)
ttCACGGGCAGCATCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTAc < 1:102350/140‑1 (MQ=255)
gcaTCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACtt > 2:1367714/1‑140 (MQ=255)
tCTGCCAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAg > 1:233119/1‑140 (MQ=255)
tCTGCCAGCGCCTGGACACGACCATGATATTGCAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAg > 2:115927/1‑140 (MQ=255)
cAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAgttgtt < 2:795646/140‑1 (MQ=255)
cAGCGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAgttgtt < 1:496442/140‑1 (MQ=255)
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ACCACCTTTAACGGTTTTAGATACGCGGTTTACCGCGATCAGCTTTTCCTGCAGTTCGCCAGCTTGTTTTTCGATGTGAGCCATCTTACACCTCTACCTTAGAACTGAAGGCCAGCTTCACGGGCAGCATCTGCCAGTGCCTGGACACGACCATGATATTGGAACCCGGAACGGTCAAAGGATACATCTTTGATGCCTTTTTCCAGAGCGCGTTCAGCGACAGCTTTACCCACAGCTGCAGCCGCGTCTTTGTTACCGGTGTACTTCAGTTGTT > NC_000913/3445146‑3445419
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
