Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	126	72.5	2472046	99.4%	2457213	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,425,452	A→G	S26G (AGT→GGT)	ynaK →	Rac prophage; ParB‑like nuclease domain‑containing protein YnaK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,425,452	0	A	G	100.0%	226.7 / NA	61	S26G (AGT→GGT)	ynaK	Rac prophage; ParB‑like nuclease domain‑containing protein YnaK
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (33/28); total (33/28)

AACACCTCCGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACAGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCTCAAAATGGATT  >  NC_000913/1425315‑1425587

aaCACCTCCGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGt                                                                                                                                       >  1:387559/1‑140 (MQ=255)

 acacCTCCGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTa                                                                                                                                      >  1:920996/1‑140 (MQ=255)

     cTCCGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGa                                                                                                                                  <  2:114036/140‑1 (MQ=255)

       ccGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGc                                                                                                                                >  1:1091575/1‑140 (MQ=255)

        cGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCa                                                                                                                               >  2:374452/1‑140 (MQ=255)

        cGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCa                                                                                                                               <  2:826822/140‑1 (MQ=255)

        cGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCa                                                                                                                               <  2:387559/140‑1 (MQ=255)

               aGTAGCACTGGCTGCTGGGGTGCGTTTTATTCGTAAAGCAAGGCTGTATGGGCGAGAAATTAAAGATAGTCAATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGca                                                                                                                        >  2:858097/1‑140 (MQ=255)

                gTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGcac                                                                                                                       <  1:119173/140‑1 (MQ=255)

                gTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGcac                                                                                                                       <  2:715182/140‑1 (MQ=255)

                 tAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGcaca                                                                                                                      >  1:881657/1‑140 (MQ=255)

                  aGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACaa                                                                                                                     >  1:601070/1‑140 (MQ=255)

                     aCTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTg                                                                                                                  <  1:458061/140‑1 (MQ=255)

                         gctgctGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAg                                                                                                              >  1:751793/1‑140 (MQ=255)

                              tgGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGt                                                                                                         >  1:886355/1‑140 (MQ=255)

                               ggggTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTa                                                                                                        <  2:125574/140‑1 (MQ=255)

                                   tGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTaa                                                                                                    >  1:679778/1‑140 (MQ=255)

                                     cGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGc                                                                                                  >  1:1008179/1‑140 (MQ=255)

                                       ttttATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCaa                                                                                                <  2:601070/140‑1 (MQ=255)

                                         ttATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAAtt                                                                                              <  2:1008179/140‑1 (MQ=255)

                                            ttCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCgg                                                                                           <  2:886355/140‑1 (MQ=255)

                                             tCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGc                                                                                          <  2:751793/140‑1 (MQ=255)

                                                  aaGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGAc                                                                                     <  2:920996/140‑1 (MQ=255)

                                                         gCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCg                                                                              >  2:557444/1‑140 (MQ=255)

                                                             tATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCATAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGc                                                                          >  2:1040163/1‑140 (MQ=255)

                                                             tATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGc                                                                          >  1:1075553/1‑140 (MQ=255)

                                                                   cGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCt                                                                         <  1:1201299/135‑1 (MQ=255)

                                                                   cGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCt                                                                         >  2:1201299/1‑135 (MQ=255)

                                                                   cGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTg                                                                    >  1:454762/1‑140 (MQ=255)

                                                                   cGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTg                                                                    >  1:603118/1‑140 (MQ=255)

                                                                       aaaTTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGa                                                                >  1:143513/1‑140 (MQ=255)

                                                                                    tCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAatt                                                   >  1:73416/1‑140 (MQ=255)

                                                                                    tCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAatt                                                   >  1:286825/1‑140 (MQ=255)

                                                                                       aTCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAattatt                                                <  1:571437/140‑1 (MQ=255)

                                                                                          gCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCg                                             >  1:181879/1‑140 (MQ=255)

                                                                                             cATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGt                                          <  2:181879/140‑1 (MQ=255)

                                                                                              aTTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTc                                         >  1:814559/1‑140 (MQ=255)

                                                                                              aTTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTc                                         <  2:1156355/140‑1 (MQ=255)

                                                                                               ttACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCa                                        <  2:881657/140‑1 (MQ=255)

                                                                                               ttACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCa                                        <  1:649802/140‑1 (MQ=255)

                                                                                                    aGAATTGTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTc                                   <  1:374452/140‑1 (MQ=255)

                                                                                                          gTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACgg                                     <  1:1126906/132‑1 (MQ=255)

                                                                                                          gTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACgg                                     >  2:1126906/1‑132 (MQ=255)

                                                                                                          gTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTa                             >  2:677883/1‑140 (MQ=255)

                                                                                                          gTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTa                             >  2:953218/1‑140 (MQ=255)

                                                                                                          gTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTa                             >  1:910814/1‑140 (MQ=255)

                                                                                                          gTCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTa                             >  1:959158/1‑140 (MQ=255)

                                                                                                           tCACCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTAt                            <  1:613814/140‑1 (MQ=255)

                                                                                                             aCCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTc                                   >  2:839378/1‑131 (MQ=255)

                                                                                                             aCCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTc                                   <  1:839378/131‑1 (MQ=255)

                                                                                                             aCCGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGCAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATgg                          <  2:1075553/140‑1 (MQ=255)

                                                                                                              ccGTATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATggc                         <  2:814559/140‑1 (MQ=255)

                                                                                                                 tATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTAt                            >  2:624234/1‑134 (MQ=255)

                                                                                                                 tATGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTAt                            <  1:624234/134‑1 (MQ=255)

                                                                                                                   tGCGCACAACGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTg                    >  2:580705/1‑140 (MQ=255)

                                                                                                                          aaCGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCt             <  2:910814/140‑1 (MQ=255)

                                                                                                                            cGCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCTCa           >  1:507140/1‑140 (MQ=255)

                                                                                                                             gCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCTCaa          >  1:31545/1‑140 (MQ=255)

                                                                                                                             gCCAGGACGCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCTCaa          >  2:503612/1‑140 (MQ=255)

                                                                                                                                aGGACGCACGGTACTGAGCAGGTGGCCCAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGAGTCACGGTCGTGTTATGGCGGCTGAAATGCTCAAAAt       <  2:1091575/140‑1 (MQ=255)

                                                                                                                                     gCACGGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCTCAAAATGGAtt  <  1:1150163/140‑1 (MQ=255)

AACACCTCCGTCCCCAGTAGCACTGGCTGCTGGGGTGCGTTTTATTCATAAAGCAAGGCTGTATGAGCGAGAAATTAAAGATAGTCTATCGCCCATTACAAGAATTGTCACCGTATGCGCACAACGCCAGGACGCACAGTACTGAGCAGGTGGCACAACTGGTAGAAAGTATTAAGCAATTCGGCTGGACTAATCCGGTGCTGATTGACGAAAAGGGCGAAATTATTGCGGGTCACGGTCGTGTTATGGCGGCTGAAATGCTCAAAATGGATT  >  NC_000913/1425315‑1425587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A