Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 126 72.5 2472046 99.4% 2457213 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,173,650 T→C T583A (ACT→GCT)  parE ← DNA topoisomerase IV subunit B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,173,6500TC100.0% 264.7 / NA 72T583A (ACT→GCT) parEDNA topoisomerase IV subunit B
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (40/32);  total (40/32)

ATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCGTCAGCGCG  >  NC_000913/3173514‑3173786
                                                                                                                                        |                                                                                                                                        
aTCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGtt                                                                                                                                       <  1:543250/140‑1 (MQ=255)
aTCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGtt                                                                                                                                       <  1:366736/140‑1 (MQ=255)
 tctcCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTc                                                                                                                                      >  2:224493/1‑140 (MQ=255)
 tctcCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTc                                                                                                                                      >  2:969535/1‑140 (MQ=255)
     cGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGAt                                                                                                                                  >  1:1027617/1‑140 (MQ=255)
          tGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGc                                                                                                                             >  1:887248/1‑140 (MQ=255)
           gTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCg                                                                                                                            >  2:103689/1‑140 (MQ=255)
           gTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCg                                                                                                                            <  1:514555/140‑1 (MQ=255)
                   tctcTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTcg                                                                                                                    <  2:1027617/140‑1 (MQ=255)
                             ccAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCa                                                                                                          <  1:186179/140‑1 (MQ=255)
                              cAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCAt                                                                                                         <  1:1198054/140‑1 (MQ=255)
                              cAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCAt                                                                                                         <  1:432902/140‑1 (MQ=255)
                                        gATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCAtt                                                                                               <  2:1060460/140‑1 (MQ=255)
                                         aTCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCAttt                                                                                              >  2:834780/1‑140 (MQ=255)
                                         aTCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCAttt                                                                                              >  1:1039193/1‑140 (MQ=255)
                                             tCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTcccc                                                                                          <  2:887248/140‑1 (MQ=255)
                                               cGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCa                                                                                        <  1:541188/140‑1 (MQ=255)
                                               cGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCAGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCa                                                                                        <  2:757282/140‑1 (MQ=255)
                                                  gCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGAc                                                                                     <  1:641101/140‑1 (MQ=255)
                                                      ttcttcGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCttt                                                                                 >  1:52379/1‑140 (MQ=255)
                                                            gCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACg                                                                           <  1:97748/140‑1 (MQ=255)
                                                              cagcagCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCt                                                                         <  1:103689/140‑1 (MQ=255)
                                                               agcagcATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTg                                                                        <  2:52379/140‑1 (MQ=255)
                                                                 cagcaTATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGa                                                                      >  1:712811/1‑140 (MQ=255)
                                                                 cagcaTATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGa                                                                      >  2:690390/1‑140 (MQ=255)
                                                                    caTATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGTACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGt                                                                   <  2:477489/140‑1 (MQ=255)
                                                                    caTATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGt                                                                   >  2:391540/1‑140 (MQ=255)
                                                                    caTATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGt                                                                   >  2:698625/1‑140 (MQ=255)
                                                                     atatCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGtt                                                                  <  2:660069/140‑1 (MQ=255)
                                                                      tatCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTc                                                                 >  1:221163/1‑140 (MQ=255)
                                                                          catcatCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCt                                                             <  1:698625/140‑1 (MQ=255)
                                                                          catcatCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCt                                                             <  1:391540/140‑1 (MQ=255)
                                                                            tcatcGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTg                                                           >  2:918113/1‑140 (MQ=255)
                                                                             catcGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGc                                                          <  1:969535/140‑1 (MQ=255)
                                                                             catcGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGc                                                          <  1:224493/140‑1 (MQ=255)
                                                                              atcGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACg                                                                    >  2:499173/1‑129 (MQ=255)
                                                                              atcGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACg                                                                    <  1:499173/129‑1 (MQ=255)
                                                                              atcGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGcc                                                         >  1:832163/1‑140 (MQ=255)
                                                                               tcGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCt                                                        <  1:690390/140‑1 (MQ=255)
                                                                                  cgTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTc                                                     >  2:45306/1‑140 (MQ=255)
                                                                                  cgTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTc                                                     >  1:1073524/1‑140 (MQ=255)
                                                                                      aGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGc                                                 >  1:208063/1‑140 (MQ=255)
                                                                                        tACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGt                                               <  2:208063/140‑1 (MQ=255)
                                                                                               aTCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAAtt                                        >  2:610555/1‑140 (MQ=255)
                                                                                               aTCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAAtt                                        >  1:1234103/1‑140 (MQ=255)
                                                                                               aTCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAAtt                                        >  2:489726/1‑140 (MQ=255)
                                                                                               aTCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAAtt                                        >  2:57880/1‑140 (MQ=255)
                                                                                                  gTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCt                                     >  1:415698/1‑140 (MQ=255)
                                                                                                  gTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCt                                     >  2:120584/1‑140 (MQ=255)
                                                                                                  gTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCt                                     >  2:45731/1‑140 (MQ=255)
                                                                                                         tcatcGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTAc                              >  2:1176153/1‑140 (MQ=255)
                                                                                                          catcGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACg                             <  2:352959/140‑1 (MQ=255)
                                                                                                            ccGATAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGcc                           <  1:918113/139‑1 (MQ=255)
                                                                                                               aTAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCctc                        >  1:1099024/1‑140 (MQ=255)
                                                                                                                tAGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCctct                       <  1:1176153/140‑1 (MQ=255)
                                                                                                                 aGTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCtt                      >  1:538880/1‑140 (MQ=255)
                                                                                                                  gTCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCttt                     >  1:689409/1‑140 (MQ=255)
                                                                                                                   tCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGcc                           >  1:694494/1‑133 (MQ=255)
                                                                                                                   tCAACTGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGcc                           <  2:694494/133‑1 (MQ=255)
                                                                                                                        tGCACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCtcttc               >  2:381446/1‑140 (MQ=255)
                                                                                                                          cACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTcttctt             >  1:991518/1‑140 (MQ=255)
                                                                                                                          cACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTcttctt             >  1:672235/1‑140 (MQ=255)
                                                                                                                          cACCAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTcttctt             >  1:349794/1‑140 (MQ=255)
                                                                                                                            ccAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTtct                   >  1:687765/1‑132 (MQ=255)
                                                                                                                            ccAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTtct                   <  2:687765/132‑1 (MQ=255)
                                                                                                                            ccAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTcc           >  1:142696/1‑140 (MQ=255)
                                                                                                                             cAGACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCg          >  2:994270/1‑140 (MQ=255)
                                                                                                                               gACGGCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCGTc        >  1:898630/1‑140 (MQ=255)
                                                                                                                                  ggCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCGTCAgc     >  2:172186/1‑140 (MQ=255)
                                                                                                                                   gCGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCGTCAgcg    <  2:1057820/140‑1 (MQ=255)
                                                                                                                                    cGAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCGTCAgcgc   <  1:994270/140‑1 (MQ=255)
                                                                                                                                     gAGCGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCGTCAGcgcg  <  1:489726/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
ATCTCCGCCATGTCGCCTTTCTCTTGCAACCAGTTGCGGCGATCTTCCGAGCGTTTCTTCGCCAGCAGCATATCCATCATCGCGTCAGTACGCTGATCGTCTTCATCATCGATAGTCAACTGCACCAGACGGCGAGTGTTCGGATCAAGCGTGGTTTCGCGCAATTGCATCGGGTTCATTTCCCCCAGACCTTTAAAACGCTGGACGTTCGGCTTGCCTTTCTTGCGTTTTAATTGCTCAAGTACGCCCTCTTTCTCTTCTTCCGTCAGCGCG  >  NC_000913/3173514‑3173786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A