Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,522,527	C→T	G180E (GGG→GAG)	yncD ←	putative TonB‑dependent outer membrane receptor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,522,527	0	C	T	100.0%	268.1 / NA	78	G180E (GGG→GAG)	yncD	putative TonB‑dependent outer membrane receptor
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (32/46); total (32/46)

TTTGGCATTGGCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCCCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAGGGGCCACGCAG  >  NC_000913/1522394‑1522660

tttGGCATTGGCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCCTTGCTTTCAGCTCATAgc                                                                                                                                 >  2:935890/1‑140 (MQ=255)

      aTTGGCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGc                                                                                                                           >  1:1128667/1‑140 (MQ=255)

        tGGCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTg                                                                                                                         >  2:946746/1‑140 (MQ=255)

          gCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGcc                                                                                                                       >  1:1587313/1‑140 (MQ=255)

          gCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGcc                                                                                                                       >  1:1095560/1‑140 (MQ=255)

          gCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGcc                                                                                                                       >  2:847443/1‑140 (MQ=255)

          gCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGcc                                                                                                                       >  2:572181/1‑140 (MQ=255)

              aaTTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCaaaa                                                                                                                   >  1:867529/1‑140 (MQ=255)

               aTTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCATGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAAc                                                                                                                  >  1:172460/1‑140 (MQ=255)

                 ttttCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTg                                                                                                                <  2:504812/140‑1 (MQ=255)

                 ttttCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTg                                                                                                                <  1:341209/140‑1 (MQ=255)

                 ttttCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTg                                                                                                                <  2:757196/140‑1 (MQ=255)

                   ttCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGcc                                                                                                              <  1:1298179/140‑1 (MQ=255)

                   ttCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGcc                                                                                                              <  2:743624/140‑1 (MQ=255)

                   ttCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGcc                                                                                                              <  1:1394687/140‑1 (MQ=255)

                      tgtgCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCgta                                                                                                           <  1:808550/140‑1 (MQ=255)

                       gtgCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCgtag                                                                                                          <  1:582405/140‑1 (MQ=255)

                          cgcCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTaa                                                                                                       <  2:809394/140‑1 (MQ=255)

                               cTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAactact                                                                                                  <  1:1069175/140‑1 (MQ=255)

                                tATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTg                                                                                                 <  2:296165/140‑1 (MQ=255)

                                       aCGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCaa                                                                                          <  1:354966/140‑1 (MQ=255)

                                       aCGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCaa                                                                                          >  1:1490591/1‑140 (MQ=255)

                                       aCGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCaa                                                                                          <  1:1108555/140‑1 (MQ=255)

                                       aCGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCaa                                                                                          <  2:1128667/140‑1 (MQ=255)

                                       aCGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCaa                                                                                          >  2:61332/1‑140 (MQ=255)

                                       aCGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCaa                                                                                          <  1:136730/140‑1 (MQ=255)

                                        cGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAAt                                                                                         <  1:577188/140‑1 (MQ=255)

                                            aGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAAtggtt                                                                                     >  1:206471/1‑140 (MQ=255)

                                            aGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAAtggtt                                                                                     <  2:1587919/140‑1 (MQ=255)

                                              ccGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAAtggttgg                                                                                   >  2:1305294/1‑140 (MQ=255)

                                                   ggTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCt                                                                              >  2:594607/1‑140 (MQ=255)

                                                   ggTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCt                                                                              >  1:290643/1‑140 (MQ=255)

                                                   ggTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCt                                                                              <  1:1116040/140‑1 (MQ=255)

                                                       gTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCtgttg                                                                          >  1:170121/1‑140 (MQ=255)

                                                       gTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCtgttg                                                                          >  1:903032/1‑140 (MQ=255)

                                                             cgcgTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGt                                                                    <  1:736203/140‑1 (MQ=255)

                                                             cgcgTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGt                                                                    <  2:1062778/140‑1 (MQ=255)

                                                             cgcgTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGt                                                                    <  1:1134329/140‑1 (MQ=255)

                                                                     tGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGggtgg                                                            <  2:459323/140‑1 (MQ=255)

                                                                       agaCGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGgtggtg                                                          <  2:950611/140‑1 (MQ=255)

                                                                        gaCGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGa                                                         <  2:1490591/140‑1 (MQ=255)

                                                                        gaCGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGa                                                         <  2:1587313/140‑1 (MQ=255)

                                                                        gaCGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGa                                                         <  1:457042/140‑1 (MQ=255)

                                                                        gaCGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGa                                                         <  2:903032/140‑1 (MQ=255)

                                                                        gaCGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGa                                                         <  2:206471/140‑1 (MQ=255)

                                                                          cGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGAca                                                       <  2:28394/140‑1 (MQ=255)

                                                                          cGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGAca                                                       <  1:446400/140‑1 (MQ=255)

                                                                            gtgtAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGAcatt                                                     >  1:946016/1‑140 (MQ=255)

                                                                            gtgtAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGAcatt                                                     >  1:1311373/1‑140 (MQ=255)

                                                                             tgtAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGAcattc                                                    >  2:1556006/1‑140 (MQ=255)

                                                                             tgtAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGAcattc                                                    >  1:980837/1‑140 (MQ=255)

                                                                               tAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGAcattcat                                                  >  2:516125/1‑140 (MQ=255)

                                                                                  tCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTAc                                               >  2:1111096/1‑140 (MQ=255)

                                                                                       aTCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCccac                                          >  1:108629/1‑140 (MQ=255)

                                                                                       aTCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGCAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCccac                                          >  2:299576/1‑140 (MQ=255)

                                                                                         cGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATTGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCccacca                                        <  1:1555737/140‑1 (MQ=255)

                                                                                         cGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCccacca                                        >  2:1243065/1‑140 (MQ=255)

                                                                                           ccAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGa                                      >  2:1347164/1‑140 (MQ=255)

                                                                                             gggCTGTGTGCCGTCTCCCGTTGCGCCCTTTGCTTTCAGCTTATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGAcg                                    <  1:935890/139‑1 (MQ=255)

                                                                                             gggCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGAcg                                    <  1:996675/139‑1 (MQ=255)

                                                                                             agccTGTGGGCCGCCTCCCGTGGCGACCGTTGCTTTCAGCTCAGAGCGCCACGTGCTAAAACTGCCGTAGTAACTAGTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGTCATTCATTTCCCCACCAGAcg                                    <  2:172460/137‑1 (MQ=255)

                                                                                             aGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGAcg                                    <  2:1131503/140‑1 (MQ=255)

                                                                                             aGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGAcg                                    <  2:867529/140‑1 (MQ=255)

                                                                                             aGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGAcg                                    <  1:169126/140‑1 (MQ=255)

                                                                                              ggCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGAcgc                                   <  1:61332/140‑1 (MQ=255)

                                                                                                  gtgtgCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTg                               <  2:646993/140‑1 (MQ=255)

                                                                                                   tgtgCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCCGGGTGGTGACATTCATTACCCCACCAGACGCGTTGc                              >  1:1315385/1‑140 (MQ=255)

                                                                                                       ccGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATa                          <  2:22187/140‑1 (MQ=255)

                                                                                                       ccGTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATa                          <  1:191274/140‑1 (MQ=255)

                                                                                                         gTCTCCCGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACa                        <  1:572181/140‑1 (MQ=255)

                                                                                                             cccGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGc                    <  2:227398/140‑1 (MQ=255)

                                                                                                              ccGTTGCGCCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCa                   <  1:164254/140‑1 (MQ=255)

                                                                                                                    cgcCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAg             >  1:1104379/1‑140 (MQ=255)

                                                                                                                     gcCCGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAgg            >  1:1273444/1‑140 (MQ=255)

                                                                                                                      cccGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAggg           >  2:534083/1‑140 (MQ=255)

                                                                                                                       ccGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAgggg          <  1:1377395/140‑1 (MQ=255)

                                                                                                                       ccGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAgggg          <  1:946746/140‑1 (MQ=255)

                                                                                                                        cGTTGCTTTCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAGGGGc         >  1:1364122/1‑140 (MQ=255)

                                                                                                                               ttCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAGGGGCCACgcag  <  1:594607/140‑1 (MQ=255)

                                                                                                                               ttCAGCTCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAGGGGCCACgcag  <  1:1111096/140‑1 (MQ=255)

TTTGGCATTGGCTAAATTTTTCTGTGCGCCACTATGGTCACGATAGCCGTGGGTCGTAAAACGCGTGGTTGAGACGGTGTAATCGACATCGCCAGGCTGTGTGCCGTCTCCCGTTGCGCCCGTTGCTTTCAGCCCATAGCGCCAGCTGCCAAAACTGCCGTAGTAACTACTGGCTTCAATGGTTGGTGGCTGTTGTCCGGTCTGGGTGGTGACATTCATTACCCCACCAGACGCGTTGCCATACAGGGCAGAGAAGGGGCCACGCAG  >  NC_000913/1522394‑1522660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A