Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
A1 F28 I1 R1
|
150 |
55.2 |
2087638 |
89.3% |
1864260 |
138.4 |
Breseq alignment
BRESEQ :: Evidence
|
evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
RA |
NC_000913 |
3,022,559 |
T→C |
V415A (GTA→GCA) |
xdhD → |
fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
|
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
* | NC_000913 | 3,022,559 | 0 | T | C | 100.0%
| 190.1
/ NA
| 53 | V415A (GTA→GCA) | xdhD | fused putative xanthine/hypoxanthine oxidase: molybdopterin‑binding subunit and Fe‑S binding subunit |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (24/29); total (24/29) |
TTGCCGATGCCGATGTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTGCGCCTGGGCA > NC_000913/3022430‑3022695
|
ttGCCGATGCCGATGTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCAc > 2:379662/1‑140 (MQ=255)
ccgatgccgatgTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTa < 2:462186/140‑1 (MQ=255)
ccgatgccgatgTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTa < 1:379662/140‑1 (MQ=255)
ccgatgccgatgTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTa < 1:270293/140‑1 (MQ=255)
cgatgTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACgccgcc < 2:427640/140‑1 (MQ=255)
tCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTcgcg < 1:330095/140‑1 (MQ=255)
aTTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTcgcgcg < 1:548658/140‑1 (MQ=255)
gCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCg > 2:950496/1‑140 (MQ=255)
aaCCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTgg > 1:242030/1‑140 (MQ=255)
aaCCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTgg > 2:75887/1‑140 (MQ=255)
aaCCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTgg > 2:535085/1‑140 (MQ=255)
aaCCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTgg < 1:532602/140‑1 (MQ=255)
cTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCa < 1:295533/140‑1 (MQ=255)
aCTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGaaa < 2:662549/140‑1 (MQ=255)
aCGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCa > 2:963351/1‑140 (MQ=255)
aCGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCa < 1:1008949/140‑1 (MQ=255)
aCGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCa > 1:805743/1‑140 (MQ=255)
cGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTgg < 1:224102/126‑1 (MQ=255)
cGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTgg > 2:224102/1‑126 (MQ=255)
cGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCAt > 1:1017193/1‑140 (MQ=255)
cGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCAt > 2:451614/1‑140 (MQ=255)
cgcAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGtt < 1:497804/140‑1 (MQ=255)
cgcAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGtt < 1:535085/140‑1 (MQ=255)
gcagTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATg < 1:937045/140‑1 (MQ=255)
tGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCAt > 1:239204/1‑140 (MQ=255)
cGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTaaa < 1:950496/140‑1 (MQ=255)
gACTGAACCACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAag > 1:545957/1‑140 (MQ=255)
cTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAagag > 1:913568/1‑140 (MQ=255)
aaaCACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGa > 2:481766/1‑140 (MQ=255)
tatCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTggcg > 2:1017579/1‑140 (MQ=255)
tatCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTggcg > 1:279662/1‑140 (MQ=255)
cTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGtt > 2:881878/1‑140 (MQ=255)
tttACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGttt > 2:119615/1‑140 (MQ=255)
aTGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCaa > 2:663064/1‑140 (MQ=255)
gACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACa > 1:807391/1‑140 (MQ=255)
cGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAgg < 2:913568/140‑1 (MQ=255)
cGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAgg > 1:841884/1‑140 (MQ=255)
cGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACa < 2:279662/140‑1 (MQ=255)
cGATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACa < 1:75887/140‑1 (MQ=255)
gATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACAt > 2:977338/1‑140 (MQ=255)
gATCGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACAt < 1:481766/140‑1 (MQ=255)
cGTCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCct < 2:203925/140‑1 (MQ=255)
tCTGGTTATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCctgc < 1:977338/140‑1 (MQ=255)
ttATCCACGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGgaa < 2:545957/140‑1 (MQ=255)
ccGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAgtg < 2:805743/139‑1 (MQ=255)
aCGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAgtg < 2:239204/140‑1 (MQ=255)
aCGCCTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAgtg < 2:807391/140‑1 (MQ=255)
ccTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTgc > 2:353174/1‑140 (MQ=255)
ccTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTgc < 2:1017193/140‑1 (MQ=255)
cTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTgcg > 1:6946/1‑140 (MQ=255)
cTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTgcg < 1:451614/140‑1 (MQ=255)
cTCCACCCAGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTgcg < 1:119615/140‑1 (MQ=255)
aGGCACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTGCGCCTGGGCa < 2:6946/140‑1 (MQ=255)
|
TTGCCGATGCCGATGTGATCATTGAGCGAACCTATAACTCAACGCAAGCGCAGCAGTGCCCGACTGAAACACATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAGGACATCCTGCTGGAAGAAGTGTGCGCCTGGGCA > NC_000913/3022430‑3022695
|
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A