Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 154 64.7 2190374 99.2% 2172851 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,994,310 G→A pseudogene (372/503 nt) pbl → transglycosylase domain‑containing protein Pbl

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,994,3100GA100.0% 327.8 / NA 90pseudogene (372/503 nt)pbltransglycosylase domain‑containing protein Pbl
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (44/46);  total (44/46)

AACCAGATGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCT  >  NC_000913/2994173‑2994445
                                                                                                                                         |                                                                                                                                       
aaCCAGATGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACa                                                                                                                                       <  2:540513/140‑1 (MQ=255)
 aCCAGATGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACaa                                                                                                                                      <  1:536211/140‑1 (MQ=255)
  ccAGATGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAAt                                                                                                                                     >  2:683956/1‑140 (MQ=255)
      aTGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCt                                                                                                                                 >  1:902656/1‑140 (MQ=255)
      aTGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCt                                                                                                                                 >  1:978532/1‑140 (MQ=255)
       tGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTg                                                                                                                                <  2:768138/140‑1 (MQ=255)
           tatTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGa                                                                                                                            >  1:290036/1‑140 (MQ=255)
                cccTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTtat                                                                                                                       >  2:25463/1‑140 (MQ=255)
                 ccTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACt                                                                                                                          >  2:689805/1‑136 (MQ=255)
                 ccTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACt                                                                                                                          <  1:689805/136‑1 (MQ=255)
                  cTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATaa                                                                                                                     >  2:607583/1‑140 (MQ=255)
                   tGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGc                                                                                                                                   <  2:406684/125‑1 (MQ=255)
                   tGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGc                                                                                                                                   >  1:406684/1‑125 (MQ=255)
                    gTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATg                                                                                                                   >  2:863107/1‑140 (MQ=255)
                        aaaaaaCGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCggg                                                                                                               <  2:533274/140‑1 (MQ=255)
                        aaaaaaCGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCggg                                                                                                               <  1:191977/140‑1 (MQ=255)
                               gTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCa                                                                                                        >  1:216098/1‑140 (MQ=255)
                               gTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCa                                                                                                        >  2:1002369/1‑140 (MQ=255)
                                             gATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCaaaa                                                                                          >  2:357973/1‑140 (MQ=255)
                                             gATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCaaaa                                                                                          >  2:772554/1‑140 (MQ=255)
                                               tGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCaaaaaa                                                                                        <  2:932541/140‑1 (MQ=255)
                                                  aCGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAaga                                                                                     >  2:745545/1‑140 (MQ=255)
                                                   cGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAagag                                                                                    >  1:143878/1‑140 (MQ=255)
                                                    gagaTTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAgaga                                                                                   <  1:607583/140‑1 (MQ=255)
                                                           gTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAg                                                                                >  1:512116/1‑136 (MQ=255)
                                                           gTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAg                                                                                <  2:512116/136‑1 (MQ=255)
                                                            ttAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAata                                                                           <  2:524203/140‑1 (MQ=255)
                                                                aTAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCaa                                                                             >  2:338893/1‑134 (MQ=255)
                                                                aTAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCaa                                                                             >  1:937757/1‑134 (MQ=255)
                                                                aTAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCaa                                                                             <  1:338893/134‑1 (MQ=255)
                                                                aTAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCaa                                                                             <  2:937757/134‑1 (MQ=255)
                                                                aTAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGcc                                                                       <  1:683956/140‑1 (MQ=255)
                                                                  aaCCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGcccc                                                                     <  1:357973/140‑1 (MQ=255)
                                                                    cccTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAGGAGACAGCAATATGCCCCaa                                                                   >  2:756776/1‑140 (MQ=255)
                                                                    cccTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaa                                                                   <  2:444378/140‑1 (MQ=255)
                                                                    cccTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaa                                                                   <  2:59092/140‑1 (MQ=255)
                                                                    cccTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaa                                                                   >  1:517458/1‑140 (MQ=255)
                                                                    cccTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCaa                                                                   <  2:114759/140‑1 (MQ=255)
                                                                        tGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAata                                                               >  1:966436/1‑140 (MQ=255)
                                                                         gTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCTTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatat                                                              >  1:235206/1‑140 (MQ=255)
                                                                         gTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatat                                                              <  1:298542/140‑1 (MQ=255)
                                                                          tCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatata                                                             >  1:891305/1‑140 (MQ=255)
                                                                          tCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatata                                                             >  1:691286/1‑140 (MQ=255)
                                                                          tCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatata                                                             >  2:1074079/1‑140 (MQ=255)
                                                                           cTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatat                                                            <  1:745545/140‑1 (MQ=255)
                                                                            tGAACATTAAAATAGGAGCCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  1:939955/140‑1 (MQ=255)
                                                                            tGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCTTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  2:235206/140‑1 (MQ=255)
                                                                            tGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  1:1002369/140‑1 (MQ=255)
                                                                            tGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  1:415580/140‑1 (MQ=255)
                                                                            tGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  1:754349/140‑1 (MQ=255)
                                                                              aaCATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  2:927338/138‑1 (MQ=255)
                                                                              aaCATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           >  1:927338/1‑138 (MQ=255)
                                                                              aaCATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATAtt                                                         >  2:254025/1‑140 (MQ=255)
                                                                                cATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGt                                                       <  1:800977/140‑1 (MQ=255)
                                                                                 aTTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           >  1:903079/1‑135 (MQ=255)
                                                                                 aTTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  2:903079/135‑1 (MQ=255)
                                                                                 aTTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           >  1:162106/1‑135 (MQ=255)
                                                                                 aTTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAatatata                                                           <  2:162106/135‑1 (MQ=255)
                                                                                 aTTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGta                                                      <  2:517458/140‑1 (MQ=255)
                                                                                   tAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGcccc                                                                     >  2:396925/1‑123 (MQ=255)
                                                                                   tAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGcccc                                                                     <  1:396925/123‑1 (MQ=255)
                                                                                   tAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGtata                                                    >  1:455375/1‑140 (MQ=255)
                                                                                      aaTAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATAc                                                 <  2:455375/140‑1 (MQ=255)
                                                                                       aTAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATAcc                                                <  1:254025/140‑1 (MQ=255)
                                                                                           gAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGc                                            >  2:345535/1‑140 (MQ=255)
                                                                                            aaCCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATAcc                                                >  2:272177/1‑135 (MQ=255)
                                                                                            aaCCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATAcc                                                <  1:272177/135‑1 (MQ=255)
                                                                                             aCCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCtt                                          >  1:943017/1‑140 (MQ=255)
                                                                                              ccGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTa                                         <  1:772554/140‑1 (MQ=255)
                                                                                              ccGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTa                                         <  2:691286/140‑1 (MQ=255)
                                                                                              ccGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTa                                         <  1:863107/140‑1 (MQ=255)
                                                                                              ccGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTa                                         <  2:891305/140‑1 (MQ=255)
                                                                                                 agaTTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAGGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATg                                      <  1:756776/140‑1 (MQ=255)
                                                                                                  gaTTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGa                                     >  2:589738/1‑140 (MQ=255)
                                                                                                      ttATATAACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTa                                 <  1:351889/140‑1 (MQ=255)
                                                                                                        atataACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGa                               <  2:966436/140‑1 (MQ=255)
                                                                                                         tataACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGAc                              <  2:902656/140‑1 (MQ=255)
                                                                                                         tataACCATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTACAATGCGGGTCTTGCAATGGATAACCAATAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGAc                              <  2:978532/140‑1 (MQ=255)
                                                                                                              ccATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTa                                         <  2:460758/124‑1 (MQ=255)
                                                                                                              ccATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTa                                         >  1:460758/1‑124 (MQ=255)
                                                                                                              ccATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGAc                              >  1:939004/1‑135 (MQ=255)
                                                                                                              ccATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGAc                              <  2:939004/135‑1 (MQ=255)
                                                                                                               cATTTTTCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGt                        <  1:1074079/140‑1 (MQ=255)
                                                                                                                 tttttCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTaa                      >  2:263088/1‑140 (MQ=255)
                                                                                                                  ttttCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAg                     >  1:165994/1‑140 (MQ=255)
                                                                                                                   tttCACGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAgg                    >  2:784449/1‑140 (MQ=255)
                                                                                                                        cGTTGTGGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCa               >  2:163071/1‑140 (MQ=255)
                                                                                                                             tgGAGTAACGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCaaa          >  1:428815/1‑140 (MQ=255)
                                                                                                                                    aCGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGcc   >  2:371811/1‑140 (MQ=255)
                                                                                                                                     cGTGACAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGGAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCt  >  2:976891/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
AACCAGATGCATATTCCCCTGTTAAAAAAACGTGGAATAATAAAAGATGAACGAGATTTGTTAGATAACCCTTGTCTGAACATTAAAATAGGAACCGAGATTTTATATAACCATTTTTCACGTTGTGGAGTAACGTGGCAATGCCTGGGGACTTATAATGCGGGTTTTGCAATGGATAACCAAAAAAAGAGACAGCAATATGCCCCAAAATATATATTGTATATACCAGGCTTAATGAACTAGACAATCGTAAGGCTTCAGCAAAATGAGCCT  >  NC_000913/2994173‑2994445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A