Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	122	83.8	2844814	99.3%	2824900	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,973,932	G→A	P695S (CCA→TCA)	aas ←	acyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,973,932	0	G	A	100.0%	340.2 / NA	95	P695S (CCA→TCA)	aas	acyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (39/56); total (39/56)

GCGCCACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGGCATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCA  >  NC_000913/2973796‑2974068

gcgcCACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACAt                                                                                                                                       <  2:222624/140‑1 (MQ=255)

gcgcCACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACAt                                                                                                                                       <  2:395556/140‑1 (MQ=255)

 gcgcACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATc                                                                                                                                      >  2:923196/4‑140 (MQ=255)

 cgcCACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATc                                                                                                                                      >  2:1276967/1‑140 (MQ=255)

   ccACGATAACCGCTTTCATCCCCTTCTACCACATCGAAGTGTTAGTCTGCACTGACTCACTCATCGTGTTCTTCCGCTTCGACTCCCCAGCCTAACAACGTAACAAAGTCATGTTTGCCGCTGCCAAGTAATGACATCTg                                                                                                                                    >  2:331598/1‑140 (MQ=255)

   ccACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTg                                                                                                                                    >  2:175486/1‑140 (MQ=255)

   ccACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTg                                                                                                                                    >  2:892889/1‑140 (MQ=255)

     aCGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGtt                                                                                                                                  <  2:363966/140‑1 (MQ=255)

         tAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAg                                                                                                                              <  2:1134571/140‑1 (MQ=255)

                   cATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAata                                                                                                                    <  1:923196/140‑1 (MQ=255)

                   cATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAata                                                                                                                    <  2:1371664/140‑1 (MQ=255)

                   cATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAata                                                                                                                    >  2:736681/1‑140 (MQ=255)

                   cATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAata                                                                                                                    <  2:499271/140‑1 (MQ=255)

                   cATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAata                                                                                                                    <  2:538089/140‑1 (MQ=255)

                   cATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAata                                                                                                                    >  2:588441/1‑140 (MQ=255)

                     tCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATc                                                                                                                  <  1:733393/140‑1 (MQ=255)

                      ccccTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATcg                                                                                                                 <  1:498945/140‑1 (MQ=255)

                       cccTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATcgc                                                                                                                <  1:1314119/140‑1 (MQ=255)

                        ccTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATcgcg                                                                                                               <  1:633422/140‑1 (MQ=255)

                        ccTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATcgcg                                                                                                               <  1:466212/140‑1 (MQ=255)

                        ccTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATcgcg                                                                                                               <  2:901435/140‑1 (MQ=255)

                          ttCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATcgcgcg                                                                                                             >  1:904057/1‑140 (MQ=255)

                            cGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGt                                                                                                           >  1:707978/1‑140 (MQ=255)

                              aCCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTAc                                                                                                         >  1:76114/1‑140 (MQ=255)

                              aCCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTAc                                                                                                         >  1:394313/1‑140 (MQ=255)

                                cacaACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAg                                                                                                       <  1:72348/140‑1 (MQ=255)

                                cacaACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAg                                                                                                       <  1:948730/140‑1 (MQ=255)

                                  caACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCa                                                                                                     >  1:1021902/1‑140 (MQ=255)

                                  caACGAAGTGTTAGTGTGCACTGAATCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCa                                                                                                     >  2:1362762/1‑140 (MQ=255)

                                   aaCGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCAAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCaa                                                                                                    >  2:654974/1‑140 (MQ=255)

                                    aCGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAg                                                                                                   >  1:1399517/1‑140 (MQ=255)

                                      gAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCt                                                                                                 <  1:892889/140‑1 (MQ=255)

                                      gAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCt                                                                                                 <  1:331598/140‑1 (MQ=255)

                                      gAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCt                                                                                                 <  1:736681/140‑1 (MQ=255)

                                             tAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCAc                                                                                          >  2:1036709/1‑140 (MQ=255)

                                              aGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCAAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACg                                                                                         <  1:654974/140‑1 (MQ=255)

                                               gtgtGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGc                                                                                        >  1:221161/1‑140 (MQ=255)

                                                  tgCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGt                                                                                     >  2:895749/1‑140 (MQ=255)

                                                    cACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACg                                                                                         <  1:535874/134‑1 (MQ=255)

                                                    cACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACg                                                                                         >  2:535874/1‑134 (MQ=255)

                                                    cACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGc                                                                                   >  2:132798/1‑140 (MQ=255)

                                                    cACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGc                                                                                   >  1:1376186/1‑140 (MQ=255)

                                                     aCTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCt                                                                                  <  1:1324222/140‑1 (MQ=255)

                                                     aCTGAATCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCt                                                                                  <  1:1362762/140‑1 (MQ=255)

                                                         actcactcATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCgg                                                                                             <  1:889833/125‑1 (MQ=255)

                                                         actcactcATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCgg                                                                                             >  2:889833/1‑125 (MQ=255)

                                                         actcactcATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTcgcg                                                                              >  1:806569/1‑140 (MQ=255)

                                                         actcactcATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTcgcg                                                                              >  1:871198/1‑140 (MQ=255)

                                                         actcactcATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTcgcg                                                                              >  1:548089/1‑140 (MQ=255)

                                                             actcaTCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCa                                                                          <  2:278485/140‑1 (MQ=255)

                                                             acccaTCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCa                                                                          <  2:871198/137‑1 (MQ=255)

                                                              ctcaTCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCAt                                                                         <  1:1308003/140‑1 (MQ=255)

                                                              ctcaTCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCAt                                                                         >  1:1088071/1‑140 (MQ=255)

                                                              ctcaTCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCAt                                                                         <  1:1055320/140‑1 (MQ=255)

                                                                 aTCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACt                                                                      >  2:582593/1‑140 (MQ=255)

                                                                   cGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGt                                                                    >  2:5724/1‑140 (MQ=255)

                                                                        tgttCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCaa                                                               >  2:624519/1‑140 (MQ=255)

                                                                         gttCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATa                                                                        <  1:664935/130‑1 (MQ=255)

                                                                         gttCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATa                                                                        >  2:664935/1‑130 (MQ=255)

                                                                             cGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTAt                                                          >  2:57873/1‑140 (MQ=255)

                                                                             cGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTAt                                                          >  2:183658/1‑140 (MQ=255)

                                                                              gCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATc                                                         <  1:10237/140‑1 (MQ=255)

                                                                              gCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATc                                                         <  1:624519/140‑1 (MQ=255)

                                                                                    tCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGt                                                   >  2:704905/1‑140 (MQ=255)

                                                                                     cTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTc                                                  <  2:707978/140‑1 (MQ=255)

                                                                                     cTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTc                                                  <  1:316831/140‑1 (MQ=255)

                                                                                     cTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTc                                                  <  2:548089/140‑1 (MQ=255)

                                                                                      tACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCa                                                 <  2:1106561/140‑1 (MQ=255)

                                                                                       aCCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAg                                                <  2:904057/140‑1 (MQ=255)

                                                                                       aCCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAg                                                <  1:1036709/140‑1 (MQ=255)

                                                                                       aCCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAg                                                <  1:588441/140‑1 (MQ=255)

                                                                                       aCCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAg                                                <  1:5724/140‑1 (MQ=255)

                                                                                       aCCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAg                                                <  2:1052468/140‑1 (MQ=255)

                                                                                       aCCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAg                                                <  1:895749/140‑1 (MQ=255)

                                                                                           aGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCg                                            <  1:57873/140‑1 (MQ=255)

                                                                                            gCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGt                                           <  2:118968/140‑1 (MQ=255)

                                                                                               tttCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTAt                                        <  1:1276967/140‑1 (MQ=255)

                                                                                               tttCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTAt                                        <  1:777652/140‑1 (MQ=255)

                                                                                                   aaCGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCtgt                                    >  1:175391/1‑140 (MQ=255)

                                                                                                          cAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGaaa                             <  2:1399517/140‑1 (MQ=255)

                                                                                                          cAAAGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGaaa                             >  2:227160/1‑140 (MQ=255)

                                                                                                            aaGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAg                           <  1:610550/140‑1 (MQ=255)

                                                                                                            aaGTCAGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAg                           <  2:394313/140‑1 (MQ=255)

                                                                                                                 aGGTTTGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCa                      <  1:183658/140‑1 (MQ=255)

                                                                                                                      tGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGcc                 <  2:1021902/140‑1 (MQ=255)

                                                                                                                      tGCCGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGcc                 <  1:704905/140‑1 (MQ=255)

                                                                                                                        ccGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTc               >  2:1224904/1‑140 (MQ=255)

                                                                                                                        ccGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTc               >  2:330530/1‑140 (MQ=255)

                                                                                                                         cGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCg              >  2:1057931/1‑140 (MQ=255)

                                                                                                                         cGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCg              <  1:1086214/140‑1 (MQ=255)

                                                                                                                         cGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCg              <  1:175486/140‑1 (MQ=255)

                                                                                                                         cGCTGCCAAGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCg              >  2:160455/1‑140 (MQ=255)

                                                                                                                                aaGTAATGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGc       <  2:806569/140‑1 (MQ=255)

                                                                                                                                     aTGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCa  >  2:618435/1‑140 (MQ=255)

                                                                                                                                     aTGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCa  <  2:1376186/140‑1 (MQ=255)

                                                                                                                                     aTGACATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCa  <  2:175391/140‑1 (MQ=255)

GCGCCACGATAACCGCTTTCATCCCCTTCGACCACAACGAAGTGTTAGTGTGCACTGACTCACTCATCGTGTTGTTCCGCTTCGTCTACCCAGCTTTTCAACGTGACAAAGTCAGGTTTGCCGCTGCCAAGTAATGGCATCTGTTTCAGATAGCGAATATCGCGCGGTACAGCAAGCTCCGGCACGCCGTGCTCGCGGGCATACTGTTGCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCA  >  NC_000913/2973796‑2974068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A