Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F48 I1 R1 45 111.1 3780378 99.2% 3750134 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,044,990 C→A G443G (GGC→GGA)  bglA → 6‑phospho‑beta‑glucosidase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,044,9900CA100.0% 348.3 / NA 97G443G (GGC→GGA) bglA6‑phospho‑beta‑glucosidase A
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (52/45);  total (52/45)

GACTACCTGCGCGCCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAATA  >  NC_000913/3044856‑3045125
                                                                                                                                      |                                                                                                                                       
gACTACCTGCGCGCCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTAt                                                                                                                                    <  1:1848736/140‑1 (MQ=255)
    aCCTGCGCGCCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTAt                                                                                                                                <  2:1811970/140‑1 (MQ=255)
     ccTGCGCGCCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTAtg                                                                                                                               >  2:254985/1‑140 (MQ=255)
       tGCGCGCCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTAtgtg                                                                                                                             >  2:750559/1‑140 (MQ=255)
       tGCGCGCCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATAGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTAtgtg                                                                                                                             >  1:915324/1‑140 (MQ=255)
         cgcgcCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGaa                                                                                                                           >  2:1248646/1‑140 (MQ=255)
           cgcCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATa                                                                                                                         >  2:1136040/1‑140 (MQ=255)
           cgcCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATa                                                                                                                         >  2:26094/1‑140 (MQ=255)
                 tatCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATg                                                                                                                   >  2:277358/1‑140 (MQ=255)
                     gAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATgacga                                                                                                               <  1:424573/140‑1 (MQ=255)
                     gAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATgacga                                                                                                               <  1:26094/140‑1 (MQ=255)
                     aaaggaaTGAAAAAGGGGGGGACTTACGATGGCGTGATCCTGAGGGGCTACACCCCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATgacga                                                                                                               <  2:135281/134‑1 (MQ=255)
                        gagaTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGacgacgt                                                                                                            >  2:722509/1‑139 (MQ=255)
                         agaTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGt                                                                                                           <  1:591996/140‑1 (MQ=255)
                         agaTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGt                                                                                                           <  1:432797/140‑1 (MQ=255)
                          gaTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTa                                                                                                          >  1:186528/1‑140 (MQ=255)
                          gaTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTa                                                                                                          <  1:722509/140‑1 (MQ=255)
                           aTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTAc                                                                                                         <  2:1292348/140‑1 (MQ=255)
                           aTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTAc                                                                                                         >  1:1300959/1‑140 (MQ=255)
                           aTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTAc                                                                                                         >  2:663362/1‑140 (MQ=255)
                           aTGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTAc                                                                                                         >  1:332757/1‑140 (MQ=255)
                            tGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATgacga                                                                                                               >  2:1641907/1‑133 (MQ=255)
                            tGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATgacga                                                                                                               <  1:1641907/133‑1 (MQ=255)
                            tGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACt                                                                                                        >  2:483112/1‑140 (MQ=255)
                                     cGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATg                                                                                               <  2:1765523/140‑1 (MQ=255)
                                     cGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATg                                                                                               <  1:981818/140‑1 (MQ=255)
                                        tGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTcg                                                                                            >  2:546491/1‑140 (MQ=255)
                                        tGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTcg                                                                                            >  1:1398057/1‑140 (MQ=255)
                                          aCTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTcgcg                                                                                          <  1:1848025/140‑1 (MQ=255)
                                          aCTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTcgcg                                                                                          <  1:254985/140‑1 (MQ=255)
                                            ttACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGtt                                                                                        <  2:1045020/140‑1 (MQ=255)
                                            ttACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGtt                                                                                        <  2:710335/140‑1 (MQ=255)
                                            ttACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGtt                                                                                        <  1:1136040/140‑1 (MQ=255)
                                            atACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGtt                                                                                        <  2:737132/139‑1 (MQ=255)
                                                  tGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGACAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTa                                                                                  <  1:1207998/140‑1 (MQ=255)
                                                    gCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTaag                                                                                >  2:1071433/1‑140 (MQ=255)
                                                    gCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTaag                                                                                >  1:278140/1‑140 (MQ=255)
                                                      gTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTaagaa                                                                              <  1:92820/140‑1 (MQ=255)
                                                       tGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTaagaag                                                                             <  2:887341/140‑1 (MQ=255)
                                                       tGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTaagaaa                                                                             >  2:613113/1‑139 (MQ=255)
                                                         gATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGAATTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAagag                                                                           >  1:1764919/1‑140 (MQ=255)
                                                           tCTGATGGGCTACATACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCt                                                                         <  1:1346152/140‑1 (MQ=255)
                                                               aTGGGCTACACCCCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGCGCACTACAGCAAACGCTACGGATTTATCTCTGCGAATAAACATGTCGACGCTACCGGCGACATGTCGCGTTTACGTAAGAAGATCTTTaa                                                                     <  2:1262115/140‑1 (MQ=255)
                                                               aTGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTTCTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTaa                                                                     <  2:124062/140‑1 (MQ=255)
                                                               aTGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTaa                                                                     <  2:186528/140‑1 (MQ=255)
                                                               aTGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTaa                                                                     >  2:627755/1‑140 (MQ=255)
                                                               aTGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTaa                                                                     <  2:1657692/140‑1 (MQ=255)
                                                               aTGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTaa                                                                     <  2:1821608/140‑1 (MQ=255)
                                                                 gggCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACt                                                                   >  1:394554/1‑140 (MQ=255)
                                                                  ggCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTg                                                                  <  1:208399/140‑1 (MQ=255)
                                                                    cTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGt                                                                <  1:951257/140‑1 (MQ=255)
                                                                    cTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGt                                                                >  1:234305/1‑140 (MQ=255)
                                                                            cGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAagag                                                        >  1:1878767/1‑140 (MQ=255)
                                                                            cGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAagag                                                        >  2:14261/1‑140 (MQ=255)
                                                                            cGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAagag                                                        >  1:241256/1‑140 (MQ=255)
                                                                            cGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAagag                                                        >  1:252791/1‑140 (MQ=255)
                                                                             gTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAgg                                                       <  2:1628748/140‑1 (MQ=255)
                                                                             gTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAgg                                                       <  1:483112/140‑1 (MQ=255)
                                                                              tGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGt                                                      >  1:703567/1‑140 (MQ=255)
                                                                                    tGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGc                                                >  1:707228/1‑140 (MQ=255)
                                                                                      cATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCa                                              >  1:1835079/1‑140 (MQ=255)
                                                                                      cATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCa                                              <  1:663362/140‑1 (MQ=255)
                                                                                      cATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCa                                              >  2:593352/1‑140 (MQ=255)
                                                                                      cATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCa                                              >  1:1694767/1‑140 (MQ=255)
                                                                                                gtgtCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCga                                    >  1:1231352/1‑140 (MQ=255)
                                                                                                gtgtCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCga                                    >  2:846297/1‑140 (MQ=255)
                                                                                                gtgtCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCga                                    <  1:593352/140‑1 (MQ=255)
                                                                                                 tgtCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCgag                                   <  1:613113/140‑1 (MQ=255)
                                                                                                 tgtCGTTCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCgag                                   <  2:1878767/140‑1 (MQ=255)
                                                                                                      ttCACCACCGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCG‑TATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCtt                             >  2:1477102/1‑140 (MQ=255)
                                                                                                         accaccGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTa                           >  1:1792169/1‑140 (MQ=255)
                                                                                                          ccaccGGGCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTaa                          <  2:1792169/140‑1 (MQ=255)
                                                                                                               gggCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGa                     >  1:715865/1‑140 (MQ=255)
                                                                                                                ggCAGTACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGAt                    >  1:1740968/1‑140 (MQ=255)
                                                                                                                     tACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGt               >  1:676393/1‑140 (MQ=255)
                                                                                                                     tACAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGt               >  2:651747/1‑140 (MQ=255)
                                                                                                                       cAGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCG‑TATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTAcc            <  1:1477102/140‑1 (MQ=255)
                                                                                                                        aGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTAcc            <  2:252791/140‑1 (MQ=255)
                                                                                                                        aGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTAcc            <  1:750559/140‑1 (MQ=255)
                                                                                                                        aGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTAcc            <  2:676393/140‑1 (MQ=255)
                                                                                                                        aGCAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTAcc            <  2:1398057/140‑1 (MQ=255)
                                                                                                                          cAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCgg          <  1:1071433/140‑1 (MQ=255)
                                                                                                                          cAAACGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCgg          >  2:29085/1‑140 (MQ=255)
                                                                                                                            aaCGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGAt        >  1:577724/1‑140 (MQ=255)
                                                                                                                             aCGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATg       <  2:915324/140‑1 (MQ=255)
                                                                                                                              cGCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGc      <  1:277358/140‑1 (MQ=255)
                                                                                                                              agCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGc      <  2:707228/139‑1 (MQ=255)
                                                                                                                               tcTACGGATTTATCTATGTGAATAAACATGACGACGGGACTGGCGATATGTCGCGTTCACGTAAGAAGAGCGTTAACTGGGACAAAGAGTTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCa     >  2:1776855/2‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGTAGTACCGGATGCa     >  2:828337/1‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCa     >  2:646456/1‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCa     >  1:1456526/1‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCa     >  2:526516/1‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCa     >  2:221487/1‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCa     >  1:1786408/1‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGAACAAAGAGGCGATTGCCAGCAACGGCGAGAAGCTTTAAGTTGATGAAGTACCGGATGCa     >  2:227093/1‑140 (MQ=255)
                                                                                                                               gCTACGGATTTATCTATGTGAATAAACATGACGACGGCACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGCGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCa     >  2:1530340/1‑140 (MQ=255)
                                                                                                                                cTACGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCaa    <  1:627755/140‑1 (MQ=255)
                                                                                                                                  aCGGATTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAATa  >  1:839423/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                       
GACTACCTGCGCGCCCATATCGAAGAGATGAAAAAAGCGGTGACTTACGATGGCGTGGATCTGATGGGCTACACACCGTGGGGCTGCATCGACTGCGTGTCGTTCACCACCGGGCAGTACAGCAAACGCTACGGCTTTATCTATGTGAATAAACATGACGACGGTACTGGCGATATGTCGCGTTCACGTAAGAAGAGCTTTAACTGGTACAAAGAGGTGATTGCCAGCAACGGCGAGAAGCTTTAAGTCGATGAAGTACCGGATGCAATA  >  NC_000913/3044856‑3045125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A