Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F48 I1 R1	66	101.5	3442112	98.9%	3404248	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,047,636	C→A	R469L (CGC→CTC)	gcvP ←	glycine decarboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,047,636	0	C	A	100.0%	306.0 / NA	87	R469L (CGC→CTC)	gcvP	glycine decarboxylase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (45/42); total (45/42)

TGCAGGAACCCAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGCGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGGTTGTTTCATCAAG  >  NC_000913/3047505‑3047772

tGCAGGAACCCAGCGAGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATc                                                                                                                                  <  2:17744/140‑1 (MQ=255)

  cAGGAACCCAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGc                                                                                                                                <  2:506331/140‑1 (MQ=255)

  cAGGAACCCAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGc                                                                                                                                >  2:1407139/1‑140 (MQ=255)

      aaCCCAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGc                                                                                                                            >  2:1141654/1‑140 (MQ=255)

          cAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGa                                                                                                                        >  1:1152920/1‑140 (MQ=255)

          cAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGa                                                                                                                        >  2:1455030/1‑140 (MQ=255)

          cAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGa                                                                                                                        >  2:990189/1‑140 (MQ=255)

             cGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATag                                                                                                                     >  1:1667567/1‑140 (MQ=255)

             cGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATag                                                                                                                     >  1:1165806/1‑140 (MQ=255)

               ggATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATagag                                                                                                                   <  1:396808/140‑1 (MQ=255)

               ggATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATagag                                                                                                                   <  1:41498/140‑1 (MQ=255)

               ggATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATagag                                                                                                                   >  2:670773/1‑140 (MQ=255)

                  tcatcGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGTTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCgg                                                                                                                >  1:857904/1‑140 (MQ=255)

                  tcatcGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCgg                                                                                                                <  1:288085/140‑1 (MQ=255)

                  tcatcGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCgg                                                                                                                <  1:1184850/140‑1 (MQ=255)

                  tcatcGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCgg                                                                                                                <  1:391568/140‑1 (MQ=255)

                       gCCTGATTCAGCGCCAGATCTTTACGCTCCCGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTc                                                                                                           >  1:149085/1‑140 (MQ=255)

                          tGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTg                                                                                                        <  1:1455030/140‑1 (MQ=255)

                          tGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTg                                                                                                        <  1:1363270/140‑1 (MQ=255)

                            aTTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAg                                                                                                      >  2:1636725/1‑140 (MQ=255)

                               cAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCa                                                                                                   <  1:247038/140‑1 (MQ=255)

                               cAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCa                                                                                                   <  1:1533496/140‑1 (MQ=255)

                                 gcgcCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACg                                                                                                 <  2:1690007/140‑1 (MQ=255)

                                  cgcCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGt                                                                                                >  1:1140769/1‑140 (MQ=255)

                                       gATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCtttt                                                                                           >  2:1403493/1‑139 (MQ=255)

                                       gATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTg                                                                                           >  1:696748/1‑140 (MQ=255)

                                       gATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTg                                                                                           >  1:1278466/1‑140 (MQ=255)

                                             tACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGc                                                                                     <  2:1278466/140‑1 (MQ=255)

                                                 cTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCgtgt                                                                                 >  2:938902/1‑140 (MQ=255)

                                                 cTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCgtgt                                                                                 <  1:860598/140‑1 (MQ=255)

                                                  tCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTTTc                                                                                >  2:496601/1‑140 (MQ=255)

                                                  tCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTc                                                                                <  2:248874/140‑1 (MQ=255)

                                                   ccAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCg                                                                               <  2:1140769/140‑1 (MQ=255)

                                                   ccAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCg                                                                               <  1:371502/140‑1 (MQ=255)

                                                    cAGCGAGTGCTTATATCGCATCATTTCGGTTTCGTTGGGCTCGCGATTAAACACCGGCTGGGTGAGGATTTCTTCGCCTAGCAGCACCGCAGGCTGGATAGAGCGGGTGTTGTGTGCCACGCCTTTATCCCACGTGTCGa                                                                              >  2:1514217/1‑140 (MQ=255)

                                                    cAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGa                                                                              >  2:228525/1‑140 (MQ=255)

                                                       cGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGt                                                                           <  1:228525/140‑1 (MQ=255)

                                                       cGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGt                                                                           >  1:1600165/1‑140 (MQ=255)

                                                       cGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGt                                                                           >  1:1510355/1‑140 (MQ=255)

                                                        gAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTc                                                                          <  2:149085/140‑1 (MQ=255)

                                                             cATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGc                                                                     <  1:1403493/140‑1 (MQ=255)

                                                               aataGCGCATCATTTCATTTTCGCTGTGGTAGCGATTAAACACCGGATAGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTATTTGTCCAGCGTGTCTATGTCCAGGCCg                                                                   <  2:739152/139‑1 (MQ=255)

                                                                   gcgcATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGt                                                               >  1:32893/1‑140 (MQ=255)

                                                                    cgcATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGtt                                                              >  2:928380/1‑140 (MQ=255)

                                                                    cgcATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGtt                                                              >  2:620213/1‑140 (MQ=255)

                                                                    cgcATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGtt                                                              >  2:358088/1‑140 (MQ=255)

                                                                     gcATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGGTAGATCGGCTGGCGTGAGCCACGTCTTTGTTTAACGTGTCGATTACCAGGCCGCGGttt                                                             >  2:485869/1‑139 (MQ=255)

                                                                     gcATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTa                                                             <  2:1152920/140‑1 (MQ=255)

                                                                     gcATCATTGCGGTTTCGCTGTGGCAGCGATTAAACACCGGATGGGGGAGGGTTTCTTCGTCTAGCAGCATCACTGGCTGGATAGCGCGGCTGGCCAGTGCGCCTTCTTTGTCCAGCGTGTCCGTGTCCAGGCCGTGGttt                                                             >  2:1305291/1‑139 (MQ=255)

                                                                      catcatTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTAt                                                            >  2:890794/1‑140 (MQ=255)

                                                                       atcatTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGTTGGATAGAGCGGCTGTAGTGAGCCACGTCTTTGTCCAGTGTGTCGATGTCCATGCCGTGGTTATc                                                           >  1:739152/1‑140 (MQ=255)

                                                                       atcatTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATc                                                           >  1:8307/1‑140 (MQ=255)

                                                                        tcatTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCg                                                          <  2:857904/140‑1 (MQ=255)

                                                                          atTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGcc                                                        <  1:1407139/140‑1 (MQ=255)

                                                                              cGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCcagc                                                    <  2:8307/140‑1 (MQ=255)

                                                                               ggTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCcagca                                                   <  1:1141654/140‑1 (MQ=255)

                                                                                gTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCcagcag                                                  <  2:1510355/140‑1 (MQ=255)

                                                                                 tttCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCagcagc                                                 >  2:1274742/1‑140 (MQ=255)

                                                                                  ttCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAgcagca                                                <  1:670773/140‑1 (MQ=255)

                                                                                  ttCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAgcagca                                                <  2:1600165/140‑1 (MQ=255)

                                                                                          ggTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGaaa                                        >  2:1527237/1‑140 (MQ=255)

                                                                                            tAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAg                                      <  1:990189/140‑1 (MQ=255)

                                                                                            tAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAg                                      <  1:1527237/140‑1 (MQ=255)

                                                                                               cGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTg                                   <  2:698838/140‑1 (MQ=255)

                                                                                                 aTTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCa                                 >  1:1375301/1‑140 (MQ=255)

                                                                                                 aTTAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCa                                 <  1:1514217/140‑1 (MQ=255)

                                                                                                   tAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCAtt                               >  1:243824/1‑140 (MQ=255)

                                                                                                   tAAACACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCAtt                               <  2:1223681/140‑1 (MQ=255)

                                                                                                    aaaCACCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTa                              <  1:1596000/140‑1 (MQ=255)

                                                                                                        acCGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGtt                          >  2:1234544/1‑140 (MQ=255)

                                                                                                         ccGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGttt                         >  1:852183/1‑140 (MQ=255)

                                                                                                         ccGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGttt                         >  1:1020860/1‑140 (MQ=255)

                                                                                                          cGGATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGtttt                        >  1:1348862/1‑140 (MQ=255)

                                                                                                            gATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTcc                      >  2:1403535/1‑139 (MQ=255)

                                                                                                            gATGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCa                      >  1:454400/1‑140 (MQ=255)

                                                                                                              tGGGTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATTGCCCAGCAGCACGTTGAAAAGCTGCATTACGATTTCAcg                    <  1:1125009/140‑1 (MQ=255)

                                                                                                               gggTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCAcgc                   >  2:244281/1‑140 (MQ=255)

                                                                                                               gggTGAGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCAcgc                   <  2:243824/140‑1 (MQ=255)

                                                                                                                    aGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGgt              >  1:622972/1‑140 (MQ=255)

                                                                                                                    aGGATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGgt              >  1:1463179/1‑140 (MQ=255)

                                                                                                                     ggATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGgtt             <  2:1375301/140‑1 (MQ=255)

                                                                                                                      gATTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGgttt            >  2:63039/1‑139 (MQ=255)

                                                                                                                       aTTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGgttgt           <  1:938902/140‑1 (MQ=255)

                                                                                                                       aTTTCGTCGTCGAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGgttgt           <  1:890794/140‑1 (MQ=255)

                                                                                                                           cgtcgtcgAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGGTTGTTtca       >  2:311415/1‑140 (MQ=255)

                                                                                                                           cgtcgtcgAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGGTTGTTtca       >  2:630604/1‑140 (MQ=255)

                                                                                                                           cgtcgtcgAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGGCTTTTTCCAGCGTGTCGGTGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCTTGGTTGTTtca       >  2:1607837/1‑140 (MQ=255)

                                                                                                                             tcgtcgAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGGTTGTTtcatc     <  1:290103/140‑1 (MQ=255)

                                                                                                                             tcgtcgAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGGTTGTTtcatc     <  1:1636725/140‑1 (MQ=255)

                                                                                                                                tcgAGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGGTTGTTTCATCAAg  >  1:1562708/1‑140 (MQ=255)

TGCAGGAACCCAGCGGGATCATCGCCTGATTCAGCGCCAGATCTTTACGCTCCAGCGAGTGCATATAGCGCATCATTTCGGTTTCGCTGTGGTAGCGATTAAACACCGGATGGGTGAGGATTTCGTCGTCGCGCAGCATCGCAGGCTGGATAGAGCGGCTGTCGTGAGCCACGTCTTTGTCCAGCGTGTCGATGTCCAGGCCGTGGTTATCGCCCAGCAGCACGTTGAAAAGCTGCATTACGTTTTCACGCGTGGTTGTTTCATCAAG  >  NC_000913/3047505‑3047772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A