Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,331,197	C→A	V186V (GTG→GTT)	obgE ←	GTPase ObgE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,331,197	0	C	A	100.0%	310.9 / NA	89	V186V (GTG→GTT)	obgE	GTPase ObgE
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (61/28); total (61/28)

GAAGCGAATGCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGTTG  >  NC_000913/3331062‑3331329

gAAGCGAATGCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACtt                                                                                                                                  >  2:362354/1‑140 (MQ=255)

  aGCGAATGCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTc                                                                                                                                >  2:1319087/1‑140 (MQ=255)

       aTGCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGttt                                                                                                                           >  1:959407/1‑140 (MQ=255)

        tGCCCAGCCCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGTTTTa                                                                                                                          <  2:76655/140‑1 (MQ=255)

        tGCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTa                                                                                                                          <  2:1870551/140‑1 (MQ=255)

        tGCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTa                                                                                                                          <  2:1853194/140‑1 (MQ=255)

         gCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAg                                                                                                                         <  1:1292393/140‑1 (MQ=255)

         gCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCAATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAg                                                                                                                         <  2:569642/140‑1 (MQ=255)

            cAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACCCCCAGACTTGGCCCCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAgccg                                                                                                                      <  2:1510990/140‑1 (MQ=255)

             aGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTCCCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAgccgc                                                                                                                     <  2:1048055/140‑1 (MQ=255)

                    cgcCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATAcc                                                                                                              >  1:1702667/1‑140 (MQ=255)

                    cgcCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATAcc                                                                                                              >  1:1473535/1‑140 (MQ=255)

                    cgcCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATAcc                                                                                                              >  1:1052478/1‑140 (MQ=255)

                      ccTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACCCCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGc                                                                                                            <  2:259479/140‑1 (MQ=255)

                      ccTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGACACCGc                                                                                                            <  2:1226688/140‑1 (MQ=255)

                       cTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCa                                                                                                           <  1:82408/140‑1 (MQ=255)

                         tCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCTGATACCGCACg                                                                                                         >  2:1153408/1‑140 (MQ=255)

                         tCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACg                                                                                                         >  2:657725/1‑140 (MQ=255)

                         tCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACg                                                                                                         >  2:762836/1‑140 (MQ=255)

                         tCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACg                                                                                                         >  1:847610/1‑140 (MQ=255)

                             cAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATa                                                                                                     <  2:1052478/140‑1 (MQ=255)

                                cgcCTTCAATCAGTCCTGGAATATTGGCAACAACGAAGCTCTTTTCGTTGTCCATTCTTACCACACCCAGACTTGGCCCCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAg                                                                                                  <  1:587205/140‑1 (MQ=255)

                                 gcCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAgg                                                                                                 >  2:1597049/1‑140 (MQ=255)

                                          cAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCTTTCGTACCACACCCAGCCTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTAc                                                                                        <  1:483994/140‑1 (MQ=255)

                                             tCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCcg                                                                                     >  2:859899/1‑140 (MQ=255)

                                             tCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCcg                                                                                     >  2:832314/1‑140 (MQ=255)

                                             tCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCcg                                                                                     >  1:1186669/1‑140 (MQ=255)

                                             tCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCcg                                                                                     >  1:1321201/1‑140 (MQ=255)

                                             tCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCcg                                                                                     >  1:479902/1‑140 (MQ=255)

                                                     aatCGGCAAAAACGAAGCTTTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGc                                                                             <  1:145690/139‑1 (MQ=255)

                                                      atCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCa                                                                            <  1:762836/140‑1 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           <  2:1702667/140‑1 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  1:1604558/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  1:1013731/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  2:1129240/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  2:1365274/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  1:1322495/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  1:1274416/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  2:453893/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  2:777885/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           <  2:959407/140‑1 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  1:325293/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           >  1:592228/1‑140 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           <  1:407883/140‑1 (MQ=255)

                                                       tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           <  1:362354/140‑1 (MQ=255)

                                                       acGGCAACAACGAAGCTCTTTTCGTTGCCCATTCGTCCCACACCCAGACTGGGCACCAGAGTGGTAAACGGATAATCCGCATCTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCAt                                                                           <  2:43131/139‑1 (MQ=255)

                                                        cGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATc                                                                          <  1:1539021/140‑1 (MQ=255)

                                                                       tctTTTCGTGGTCATTTCGTACCACACCCAGTCTTGGCACCAGAGTGGTAACCGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTCCCCGCGTTTGGCATCCCCAACATACCGACg                                                           <  2:293946/140‑1 (MQ=255)

                                                                        ctTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGt                                                          >  2:561480/1‑140 (MQ=255)

                                                                        ctTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGt                                                          >  2:1110123/1‑140 (MQ=255)

                                                                           ttCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTcag                                                       <  1:1153408/140‑1 (MQ=255)

                                                                                tGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTcagccagc                                                  >  2:74847/1‑140 (MQ=255)

                                                                                tGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGACAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTcagccagc                                                  >  2:862342/1‑140 (MQ=255)

                                                                                  tCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCcagcag                                                >  2:1111377/1‑140 (MQ=255)

                                                                                   ccATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCagcagc                                               >  1:1847223/1‑140 (MQ=255)

                                                                                   ccATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCagcagc                                               >  2:398243/1‑140 (MQ=255)

                                                                                   ccATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCagcagc                                               >  1:1446247/1‑140 (MQ=255)

                                                                                       tCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCa                                           <  1:1365274/140‑1 (MQ=255)

                                                                                       tCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCa                                           <  1:1110123/140‑1 (MQ=255)

                                                                                       tCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCa                                           <  1:859899/140‑1 (MQ=255)

                                                                                         gTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACTTACCGACGTCAGCCAGCAGCATCAGc                                         <  2:1321201/140‑1 (MQ=255)

                                                                                         atACCACACCCAGACTTGCAACAAGAGTGGTAAACGGATAACCCGCAACTTTGGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGc                                         <  2:197984/139‑1 (MQ=255)

                                                                                            ccACACCCAGACTTGGCACCAGAGTGGTAAACGTATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTcc                                      >  1:219282/1‑140 (MQ=255)

                                                                                                 cccAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCcagcag                                 >  1:1616819/1‑140 (MQ=255)

                                                                                                 cccAGACTTGGCACCAGAGTGGTAAACGGACAACCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCcagcag                                 <  1:862342/140‑1 (MQ=255)

                                                                                                       cTTGGCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTc                           >  1:1604365/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGTCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  2:1491293/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgtg                        >  2:783305/1‑138 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  1:208723/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  1:1227922/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  2:952171/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  2:837330/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  1:1696846/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  1:334567/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  1:1601733/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  2:1098869/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcg                        >  1:318732/1‑140 (MQ=255)

                                                                                                          ggCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTcgcc                        >  1:1716907/1‑139 (MQ=255)

                                                                                                           gCACCAGAGTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCgcgc                       <  2:479902/140‑1 (MQ=255)

                                                                                                                agagTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATc                  >  2:1581727/1‑140 (MQ=255)

                                                                                                                agagTGGTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATc                  >  1:380137/1‑140 (MQ=255)

                                                                                                                      gTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCgg            >  2:495657/1‑140 (MQ=255)

                                                                                                                      gTAAACGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCgg            >  1:1756052/1‑140 (MQ=255)

                                                                                                                         aaCGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGt         >  1:218351/1‑140 (MQ=255)

                                                                                                                           cGGATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGc       <  2:1601733/140‑1 (MQ=255)

                                                                                                                            ggATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGcc      >  1:766248/1‑140 (MQ=255)

                                                                                                                            ggATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGcc      >  1:1698437/1‑140 (MQ=255)

                                                                                                                             gATAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCg     <  1:1111377/140‑1 (MQ=255)

                                                                                                                              aTAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGt    >  2:1242881/1‑140 (MQ=255)

                                                                                                                              aTAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGt    <  2:847610/140‑1 (MQ=255)

                                                                                                                              aTAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGt    >  2:1672312/1‑140 (MQ=255)

                                                                                                                              aTAATCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGt    >  2:1692707/1‑140 (MQ=255)

                                                                                                                                aaTCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGTTg  >  2:1586352/1‑140 (MQ=255)

                                                                                                                                aaTCCGCAACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGTTg  >  2:1870052/1‑140 (MQ=255)

GAAGCGAATGCCCAGACCTGCGCCTTCCGCAGCGCCTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGATACCGCACGAATAAAGGTCGATTTACCCGCGTTTGGCATCCCCAACATACCGACGTCAGCCAGCAGCATCAGCTCCAGCAGCAGCTCGCGCTTATCGCCCGGCGTGCCGTTG  >  NC_000913/3331062‑3331329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A