Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,397,022	C→A	E258D (GAG→GAT)	rng ←	RNase G

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,397,022	0	C	A	99.0%	366.7 / NA	103	E258D (GAG→GAT)	rng	RNase G
Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (49/53); minor base G (1/0); total (50/53)
Fisher's exact test for biased strand distribution p-value = 4.85e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 104 total aligned reads displayed.

TCCACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGCTCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTGCGCCAGCGCCA  >  NC_000913/3396885‑3397158

tCCACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTGCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATc                                                                                                                                        <  2:1142401/140‑1 (MQ=255)

  cACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATcct                                                                                                                                      >  2:227198/1‑139 (MQ=255)

  cACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCa                                                                                                                                      >  1:1830928/1‑140 (MQ=255)

  cACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCa                                                                                                                                      >  2:1619388/1‑140 (MQ=255)

  cACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCa                                                                                                                                      >  1:85100/1‑140 (MQ=255)

  cACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCa                                                                                                                                      >  2:634197/1‑140 (MQ=255)

    cGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAgc                                                                                                                                    >  1:749283/1‑140 (MQ=255)

    cGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAgc                                                                                                                                    <  2:1338386/140‑1 (MQ=255)

     ggtggtCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAgct                                                                                                                                   <  2:1661078/140‑1 (MQ=255)

         gtCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAgcttgct                                                                                                                               >  2:1469744/1‑140 (MQ=255)

          tcatcaCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAgcttgctt                                                                                                                              <  2:833397/140‑1 (MQ=255)

           taTCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGcttgcttg                                                                                                                             <  2:844049/139‑1 (MQ=255)

            aTCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGt                                                                                                                            <  1:212240/140‑1 (MQ=255)

            aTCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGt                                                                                                                            <  1:634197/140‑1 (MQ=255)

             tCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTc                                                                                                                           <  2:40855/140‑1 (MQ=255)

              cGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCa                                                                                                                          <  2:582615/140‑1 (MQ=255)

               gCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCAt                                                                                                                         <  1:297234/140‑1 (MQ=255)

               gCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCAt                                                                                                                         <  2:85100/140‑1 (MQ=255)

                 ttCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCAtct                                                                                                                       >  2:1814325/1‑140 (MQ=255)

                 ttCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCAtct                                                                                                                       >  2:894647/1‑140 (MQ=255)

                 ttCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCAtct                                                                                                                       <  1:372534/140‑1 (MQ=255)

                 ttCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCAt                                                                                                                         >  1:1603501/1‑138 (MQ=255)

                 ttCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCAt                                                                                                                         <  2:1603501/138‑1 (MQ=255)

                   cGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCTTCCTGTGTATTGATCCAGCTTGCTTGTCATCTCg                                                                                                                     >  2:1748419/1‑140 (MQ=255)

                   cGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCg                                                                                                                     >  2:416185/1‑140 (MQ=255)

                   cGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCg                                                                                                                     <  2:69650/140‑1 (MQ=255)

                    ggTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCgg                                                                                                                    <  2:307037/140‑1 (MQ=255)

                    ggTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCgg                                                                                                                    >  2:286349/1‑140 (MQ=255)

                     gTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCggg                                                                                                                   <  1:1360333/140‑1 (MQ=255)

                      tCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGa                                                                                                                  <  1:1814325/140‑1 (MQ=255)

                      tCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGa                                                                                                                  <  1:227198/140‑1 (MQ=255)

                        tGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAAt                                                                                                                <  2:1612389/140‑1 (MQ=255)

                                   gagaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAgg                                                                                                     <  1:1641815/140‑1 (MQ=255)

                                    agaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCg                                                                                                                     >  1:1290668/1‑123 (MQ=255)

                                    agaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCg                                                                                                                     <  2:1290668/123‑1 (MQ=255)

                                    agaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAAACGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGt                                                                                                    >  2:1744049/1‑140 (MQ=255)

                                     gaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTg                                                                                                   <  1:34450/140‑1 (MQ=255)

                                     gaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTg                                                                                                   <  2:1578313/140‑1 (MQ=255)

                                     gaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTg                                                                                                   <  2:1758428/140‑1 (MQ=255)

                                     gaTAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTg                                                                                                   >  1:530166/1‑140 (MQ=255)

                                       tAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGaa                                                                                                 <  1:894647/140‑1 (MQ=255)

                                        aaCCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCCGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAAc                                                                                                <  2:1854885/140‑1 (MQ=255)

                                         accaccGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAAc                                                                                                <  2:1844883/139‑1 (MQ=255)

                                         accaccGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAAc                                                                                                >  1:1844883/1‑139 (MQ=255)

                                         accaccGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACt                                                                                               >  1:1121332/1‑140 (MQ=255)

                                              cGGATTTCAGTTCTACTTTGCGTTCCAGTGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGt                                                                                          <  2:1771914/140‑1 (MQ=255)

                                                gATTTCAGTTCTACTTTGCGTTCCAGCGCTTGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTaa                                                                                        <  1:51434/140‑1 (MQ=255)

                                                           tACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAg                                                                             >  1:1732111/1‑140 (MQ=255)

                                                             ttctGCGTTCCAGCGCTCGGTTGATTTAGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTc                                                                           <  2:1747766/137‑1 (MQ=255)

                                                             cTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTc                                                                           >  1:738307/1‑140 (MQ=255)

                                                             cTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTc                                                                           >  2:1684772/1‑140 (MQ=255)

                                                             cTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTc                                                                           >  2:1737126/1‑140 (MQ=255)

                                                             cTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAAACGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTc                                                                           <  1:1744049/140‑1 (MQ=255)

                                                                tGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAgg                                                                        >  1:177000/1‑140 (MQ=255)

                                                                tGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAgg                                                                        >  2:217319/1‑140 (MQ=255)

                                                                  cGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTc                                                                           <  2:1211805/135‑1 (MQ=255)

                                                                  cGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTc                                                                           >  1:1211805/1‑135 (MQ=255)

                                                                  cGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCg                                                                      >  1:1404065/1‑140 (MQ=255)

                                                                  cGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCg                                                                      >  2:1164564/1‑140 (MQ=255)

                                                                  cGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCg                                                                      >  1:527519/1‑140 (MQ=255)

                                                                       cAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGt                                                                 <  2:1072318/140‑1 (MQ=255)

                                                                       cAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGt                                                                 >  2:1808714/1‑140 (MQ=255)

                                                                            ctcgctGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAAcg                                                            >  2:676974/1‑140 (MQ=255)

                                                                            ctcgctGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAAcg                                                            >  1:1482440/1‑140 (MQ=255)

                                                                             tcgctGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAAcgc                                                           <  1:1159273/140‑1 (MQ=255)

                                                                               gctGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGa                                                         >  2:1092574/1‑140 (MQ=255)

                                                                                 tGGATTTCGTTTTCGACATGAAAGAGATTGAAAATCGGCTGGCGTCCTGTGAAATTGTCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCGTCGTAAGTCAGGCGAAAGTCAAGGCGAAt                                                       >  1:1776259/1‑140 (MQ=255)

                                                                                 tGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAAt                                                       <  1:1808714/140‑1 (MQ=255)

                                                                                  ggATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATg                                                      <  2:530166/140‑1 (MQ=255)

                                                                                  ggATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATg                                                      <  1:1619388/140‑1 (MQ=255)

                                                                                       tCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTc                                                 >  2:382476/1‑140 (MQ=255)

                                                                                       tCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTc                                                 <  2:1732111/140‑1 (MQ=255)

                                                                                       tCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTc                                                 <  2:1404065/140‑1 (MQ=255)

                                                                                        cGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTcc                                                >  2:973947/1‑140 (MQ=255)

                                                                                             tCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTc                                           >  2:1310556/1‑140 (MQ=255)

                                                                                              cGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCg                                          >  1:1399871/1‑140 (MQ=255)

                                                                                               gACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCgg                                         >  2:896111/1‑140 (MQ=255)

                                                                                                aCATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGc                                        <  1:666185/140‑1 (MQ=255)

                                                                                                  aTCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCAt                                      <  1:659406/140‑1 (MQ=255)

                                                                                                  aTCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCAt                                      >  2:908136/1‑140 (MQ=255)

                                                                                                       agagATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCg                                 <  1:1164564/140‑1 (MQ=255)

                                                                                                       agagATCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCg                                 <  2:749283/140‑1 (MQ=255)

                                                                                                           aTCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGTTCCAGTTCGGCCTCGGCGAAAt                             >  2:157385/1‑140 (MQ=255)

                                                                                                           aTCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAAt                             >  1:1499660/1‑140 (MQ=255)

                                                                                                           aTCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAAt                             >  1:482774/1‑140 (MQ=255)

                                                                                                           aTCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAAt                             >  1:355802/1‑140 (MQ=255)

                                                                                                           aTCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAAt                             >  2:1000233/1‑140 (MQ=255)

                                                                                                           aTCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAAt                             >  1:1218725/1‑140 (MQ=255)

                                                                                                            tCGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATc                            >  1:1460658/1‑140 (MQ=255)

                                                                                                             cGAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCa                           >  1:1380868/1‑140 (MQ=255)

                                                                                                              gAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCAc                          <  1:1684772/140‑1 (MQ=255)

                                                                                                              gAAAATCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCAc                          <  2:1460658/140‑1 (MQ=255)

                                                                                                                  aTCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAg                      <  2:1557627/140‑1 (MQ=255)

                                                                                                                   tCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGa                     >  1:1339207/1‑140 (MQ=255)

                                                                                                                   tCGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGa                     >  1:1208959/1‑140 (MQ=255)

                                                                                                                    cGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGaa                    <  1:1334350/140‑1 (MQ=255)

                                                                                                                    cGGCTGGCGTCCTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGaa                    >  1:276536/1‑140 (MQ=255)

                                                                                                                               cTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGGGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTgcgcc         <  2:940956/140‑1 (MQ=255)

                                                                                                                               cTGTGTAATGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTgcgcc         <  2:1339207/140‑1 (MQ=255)

                                                                                                                                      aTGATCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTgcgccagcgcca  <  1:1469744/140‑1 (MQ=255)

TCCACGGTGGTCATCGCTTCGGTCTGGTCGATAATGAGATAACCACCGGATTTCAGTTCTACTTTGCGTTCCAGCGCTCGCTGGATTTCGTTTTCGACATCAAAGAGATCGAAAATCGGCTGGCGTCCTGTGTAATGCTCCAGCTTGCTTGTCATCTCGGGAATGTACTCCGAGGTGAACTCAAGTAACGCTTCGTAAGTCAGGCGTGAGTCAACGCGAATGCGGTCCAGTTCGGCATCGGCGAAATCACGCAGAACACGCTGCGCCAGCGCCA  >  NC_000913/3396885‑3397158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A