Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F48 I1 R1 45 111.1 3780378 99.2% 3750134 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,488,966 C→A G405G (GGG→GGT)  argD ← N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,488,9660CA99.0% 336.9 / ‑5.9 97G405G (GGG→GGT) argDN‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (40/56);  minor base G (0/1);  total (40/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCC  >  NC_000913/3488831‑3489101
                                                                                                                                       |                                                                                                                                       
tggcGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCaa                                                                                                                                     <  2:27215/140‑1 (MQ=255)
tggcGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCaa                                                                                                                                     <  2:246695/140‑1 (MQ=255)
tggcGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCaa                                                                                                                                     <  1:81316/140‑1 (MQ=255)
  gcGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAacc                                                                                                                                   <  2:1512063/140‑1 (MQ=255)
    gTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAaccac                                                                                                                                 <  2:1164733/140‑1 (MQ=255)
    gTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAaccac                                                                                                                                 <  2:1653788/140‑1 (MQ=255)
       aGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCtt                                                                                                                              >  1:998336/1‑140 (MQ=255)
          gACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGc                                                                                                                           <  2:142348/140‑1 (MQ=255)
          gACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGc                                                                                                                           <  1:637472/140‑1 (MQ=255)
          gACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGc                                                                                                                           <  1:1368803/140‑1 (MQ=255)
           aCCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGcc                                                                                                                          >  1:1399456/1‑140 (MQ=255)
              gCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCAcc                                                                                                                       >  1:1310680/1‑140 (MQ=255)
                aTCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACcgc                                                                                                                     <  2:1036645/140‑1 (MQ=255)
                 tCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAAGGCAGGCTAAACCATCGAATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACcgcg                                                                                                                    <  2:801052/140‑1 (MQ=255)
                       gATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCg                                                                                                              <  2:762423/140‑1 (MQ=255)
                       gATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCg                                                                                                              >  1:1523982/1‑140 (MQ=255)
                       gATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCg                                                                                                              <  2:1719045/140‑1 (MQ=255)
                       gATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCg                                                                                                              <  2:302826/140‑1 (MQ=255)
                        aTTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGa                                                                                                             >  1:1451817/1‑140 (MQ=255)
                        aTTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGAAATGCAGGCAAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGa                                                                                                             <  2:684067/140‑1 (MQ=255)
                         tttGGTTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGaa                                                                                                            <  1:1008306/140‑1 (MQ=255)
                         tttGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGaa                                                                                                            <  1:375438/140‑1 (MQ=255)
                          ttGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGaaa                                                                                                           <  2:1399456/140‑1 (MQ=255)
                          ttGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGaaa                                                                                                           <  1:1874486/140‑1 (MQ=255)
                            ggCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACACCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACg                                                                                                         <  1:348762/140‑1 (MQ=255)
                              cTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGtt                                                                                                       >  2:1610103/1‑140 (MQ=255)
                               tGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAACCCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTg                                                                                                      <  1:300915/140‑1 (MQ=255)
                               tGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTg                                                                                                      <  1:1109349/140‑1 (MQ=255)
                                gAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGc                                                                                                     <  2:123734/140‑1 (MQ=255)
                                gAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGc                                                                                                     <  1:1376844/140‑1 (MQ=255)
                                 aGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCa                                                                                                    <  1:1486650/140‑1 (MQ=255)
                                  gTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCAt                                                                                                   <  2:461410/140‑1 (MQ=255)
                                  gTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCAt                                                                                                   <  1:496728/140‑1 (MQ=255)
                                     gCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATccc                                                                                                <  1:1358805/140‑1 (MQ=255)
                                       aaGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCtt                                                                                              <  2:505559/140‑1 (MQ=255)
                                          ttGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCAt                                                                                           <  2:1869213/140‑1 (MQ=255)
                                           tGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATc                                                                                          >  2:705521/1‑140 (MQ=255)
                                            gCGGGATTCGAAGGCGTAATGCGGGCTAACCCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCGCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCg                                                                                         <  1:741935/140‑1 (MQ=255)
                                                   tCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCg                                                                                  <  1:1193982/140‑1 (MQ=255)
                                                     gAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCa                                                                                <  2:1523982/140‑1 (MQ=255)
                                                     gAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCa                                                                                <  1:784240/140‑1 (MQ=255)
                                                     aaaGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCa                                                                                <  2:1441529/139‑1 (MQ=255)
                                                      aaGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCAt                                                                               <  1:200527/140‑1 (MQ=255)
                                                       aGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCCCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATc                                                                              <  2:1227370/140‑1 (MQ=255)
                                                           gTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTcc                                                                          <  1:1039574/140‑1 (MQ=255)
                                                                    gCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGc                                                                 >  2:1133741/1‑140 (MQ=255)
                                                                    gCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGc                                                                 >  1:1869295/1‑140 (MQ=255)
                                                                         aCCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGTGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACgg                                                            >  1:1690106/1‑140 (MQ=255)
                                                                         aCCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACgg                                                            >  1:167149/1‑140 (MQ=255)
                                                                         aCCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACgg                                                            >  1:1241917/1‑140 (MQ=255)
                                                                         aCCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACgg                                                            >  2:93936/1‑140 (MQ=255)
                                                                           cATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTg                                                          <  2:1684268/140‑1 (MQ=255)
                                                                             tCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCa                                                        >  2:1878618/1‑140 (MQ=255)
                                                                              cGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGTGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCaa                                                       >  1:1527190/1‑140 (MQ=255)
                                                                              cGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCaa                                                       >  2:650964/1‑140 (MQ=255)
                                                                              cGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCaa                                                       >  2:1041328/1‑140 (MQ=255)
                                                                              cGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCaa                                                       >  1:1410705/1‑140 (MQ=255)
                                                                              cGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCaa                                                       >  1:1529354/1‑140 (MQ=255)
                                                                               ggATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGAGCGAAACGTTGCATCCCTTCATCGATATCCTCATCTTCCACCACCAGCGACGGAGCaaa                                                      >  2:1745179/1‑140 (MQ=255)
                                                                                gATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCaaaa                                                     <  1:1334239/140‑1 (MQ=255)
                                                                                    aGGCATTCACGCCGCATCCGACATCTTCTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAGCGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCATAACGCa                                                 <  2:1241917/140‑1 (MQ=255)
                                                                                         ttCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATcaca                                            >  2:261862/1‑140 (MQ=255)
                                                                                           cACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtc                                          >  2:1762903/1‑140 (MQ=255)
                                                                                                cgcATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCTCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtccggtc                                     >  1:496556/1‑140 (MQ=255)
                                                                                                cgcATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtccggtc                                     >  1:717142/1‑140 (MQ=255)
                                                                                                cgcATCCGACATCTTTTGCCTGATGCTTCGTAATTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtccggtc                                     >  1:1432510/1‑140 (MQ=255)
                                                                                                  cATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtccggtccg                                   <  2:243456/140‑1 (MQ=255)
                                                                                                  cATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtccggtccg                                   <  1:593072/140‑1 (MQ=255)
                                                                                                  cATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtccggtccg                                   <  2:1451817/140‑1 (MQ=255)
                                                                                                  cATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACAtccggtccg                                   >  2:1300951/1‑140 (MQ=255)
                                                                                                    tCCGACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCACATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGc                                 >  1:243857/1‑140 (MQ=255)
                                                                                                       gACATCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCAtt                              <  1:1133741/140‑1 (MQ=255)
                                                                                                           tCTTTTGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGc                          <  1:552207/140‑1 (MQ=255)
                                                                                                             ttttGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCAc                        >  1:345585/1‑140 (MQ=255)
                                                                                                               ttGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCa                      >  2:54912/1‑140 (MQ=255)
                                                                                                               ttGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCa                      <  1:1878618/140‑1 (MQ=255)
                                                                                                               ttGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCa                      >  2:243177/1‑140 (MQ=255)
                                                                                                               ttGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCa                      <  2:1548981/140‑1 (MQ=255)
                                                                                                               ttGCCTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCATCCACCACCAGCGACGGTGCAAGACGCATCACATCCGGTCCGGCATTCAGCACCa                      <  2:998336/140‑1 (MQ=255)
                                                                                                                  ccTGATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTa                   >  1:862279/1‑140 (MQ=255)
                                                                                                                     gATGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGc                <  2:167149/140‑1 (MQ=255)
                                                                                                                      aTGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGcc               >  2:1409838/1‑140 (MQ=255)
                                                                                                                      aTGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGcc               >  1:586216/1‑140 (MQ=255)
                                                                                                                      aTGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGcc               >  1:1764908/1‑140 (MQ=255)
                                                                                                                      aTGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGcc               >  2:1682120/1‑140 (MQ=255)
                                                                                                                      aTGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGcc               >  2:822707/1‑140 (MQ=255)
                                                                                                                      aTGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGcc               >  2:1030204/1‑140 (MQ=255)
                                                                                                                       tGCTTCGTATTTACGCACCAACCACCTTTGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCCTCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGTCATTCAGCACCATTACACCa              <  2:1771155/140‑1 (MQ=255)
                                                                                                                       tGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCa              >  1:314001/1‑140 (MQ=255)
                                                                                                                       tGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCa              >  2:864568/1‑140 (MQ=255)
                                                                                                                       tGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCa              <  2:7088/140‑1 (MQ=255)
                                                                                                                       tGCTTCGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCa              <  1:1762903/140‑1 (MQ=255)
                                                                                                                            cGTATTTACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCctc         <  2:717142/140‑1 (MQ=255)
                                                                                                                            cGTATTTACACACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCctc         <  1:109113/140‑1 (MQ=255)
                                                                                                                               aTTTACGCACCAACCACCTCCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTgc      <  2:1841485/140‑1 (MQ=255)
                                                                                                                                  tACGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGcc   <  2:1527190/140‑1 (MQ=255)
                                                                                                                                   aCGCACCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGccc  >  2:942514/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                       
TGGCGTCAGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCC  >  NC_000913/3488831‑3489101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A