Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,491,835 C→A G155C (GGC→TGC)  ppiA ← peptidyl‑prolyl cis‑trans isomerase A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,491,8350CA100.0% 278.5 / NA 81G155C (GGC→TGC) ppiApeptidyl‑prolyl cis‑trans isomerase A
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (37/44);  total (37/44)

CAAGATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCCTTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGATGGTGCCA  >  NC_000913/3491701‑3491971
                                                                                                                                      |                                                                                                                                        
cAAGATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTca                                                                                                                                     <  2:1805517/140‑1 (MQ=255)
 aaGATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTcac                                                                                                                                    <  1:1232052/140‑1 (MQ=255)
 aaGATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTcac                                                                                                                                    <  2:208263/140‑1 (MQ=255)
 aaGATTGCACGAGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGAACCTGGGAAATCTTATCGGCAACTTCCATGCAttcccg                                                                                                                                    <  2:957001/140‑5 (MQ=255)
   gATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTTACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTTGGAAATCTTATCGGCAACGTCCATGCATTTcacca                                                                                                                                  >  2:1766345/1‑140 (MQ=255)
   gATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTcacca                                                                                                                                  <  2:2016018/140‑1 (MQ=255)
   gATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTcacca                                                                                                                                  <  1:1643391/140‑1 (MQ=255)
     ttGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACctct                                                                                                                                <  2:469304/140‑1 (MQ=255)
     ttGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACt                                                                                                                                <  1:1008927/140‑1 (MQ=255)
     ttGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACt                                                                                                                                <  1:727642/140‑1 (MQ=255)
     ttGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGAGAAATCTTATCGGCAACGTCCATGCATTTCACCACt                                                                                                                                <  1:275719/140‑1 (MQ=255)
        cccGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTa                                                                                                                             <  1:595736/140‑1 (MQ=255)
         ccGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTAc                                                                                                                            >  1:1671606/1‑140 (MQ=255)
             gcgAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCaaa                                                                                                                        >  2:1090400/1‑140 (MQ=255)
                        ttACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAAc                                                                                                             <  1:1802913/140‑1 (MQ=255)
                           cGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGa                                                                                                          >  1:218771/1‑140 (MQ=255)
                            ggCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGaa                                                                                                         >  1:831895/1‑140 (MQ=255)
                             gCAGGACTTTAGCGTAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGaaa                                                                                                        <  2:1417854/140‑1 (MQ=255)
                                ggACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAAt                                                                                                       >  2:900376/1‑138 (MQ=255)
                                ggACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAAt                                                                                                       <  1:900376/138‑1 (MQ=255)
                                 gACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCTAAATCAc                                                                                                    >  1:196374/1‑140 (MQ=255)
                                   cTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGc                                                                                                  <  1:417088/140‑1 (MQ=255)
                                      tAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGa                                                                                               >  1:947783/1‑140 (MQ=255)
                                        gCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGAcc                                                                                             >  2:2111179/1‑140 (MQ=255)
                                        gCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGAcc                                                                                             <  2:1417753/140‑1 (MQ=255)
                                         cGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCa                                                                                            <  2:218771/140‑1 (MQ=255)
                                         aggAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCa                                                                                            <  2:196374/139‑1 (MQ=255)
                                            aaaGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATgt                                                                                         >  2:821288/1‑139 (MQ=255)
                                            aaaGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATgg                                                                                         <  2:175510/140‑1 (MQ=255)
                                                 aTAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCa                                                                                            <  2:719800/132‑1 (MQ=255)
                                                 aTAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCa                                                                                            >  1:719800/1‑132 (MQ=255)
                                                     cTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCaaggaag                                                                                >  2:1494452/1‑140 (MQ=255)
                                                        ccGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGct                                                                             >  2:1792341/1‑139 (MQ=255)
                                                        ccGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCg                                                                             >  2:1930056/1‑140 (MQ=255)
                                                        ccGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCg                                                                             >  1:920106/1‑140 (MQ=255)
                                                         cGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGt                                                                            <  1:1090400/140‑1 (MQ=255)
                                                          ggTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGtt                                                                           >  1:1395259/1‑140 (MQ=255)
                                                          ggTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGtt                                                                           >  2:110808/1‑140 (MQ=255)
                                                          ggTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGtt                                                                           >  2:1225566/1‑140 (MQ=255)
                                                                 aCGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATGCCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCa                                                                    <  1:1860629/140‑1 (MQ=255)
                                                                 aCGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCa                                                                    <  1:1469795/140‑1 (MQ=255)
                                                                    gCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACg                                                                 <  2:920106/140‑1 (MQ=255)
                                                                     cacaTTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGt                                                                <  1:930965/140‑1 (MQ=255)
                                                                     cacaTTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGt                                                                >  1:1653343/1‑140 (MQ=255)
                                                                     cacaTTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGt                                                                <  2:831895/140‑1 (MQ=255)
                                                                     aacaTTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGt                                                                <  2:14095/139‑1 (MQ=255)
                                                                          tCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATa                                                           <  1:1452428/140‑1 (MQ=255)
                                                                               tACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGaa                                                      >  1:865056/1‑140 (MQ=255)
                                                                                 cGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAAct                                                    >  1:637711/1‑140 (MQ=255)
                                                                                    aCCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAActggc                                                 >  1:849228/1‑140 (MQ=255)
                                                                                    aCCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCAGCAGCGTTGATAAGGAActggc                                                 >  2:2091258/1‑140 (MQ=255)
                                                                                    aCCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGACGTTATCGGCAACGTTGATAAAGAActggt                                                 >  2:542261/1‑139 (MQ=255)
                                                                                    aCCAACGACATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAActggc                                                 >  2:1550817/1‑140 (MQ=255)
                                                                                        aCGTCATGAGTCGGAACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCACCAACGTTGATAAAGAACTGGCtggt                                             >  2:965471/1‑140 (MQ=255)
                                                                                             aTGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGgcgc                                        >  2:1156713/1‑140 (MQ=255)
                                                                                              tGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCt                                       <  2:1395259/140‑1 (MQ=255)
                                                                                               gAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTg                                      <  2:1708833/140‑1 (MQ=255)
                                                                                                 gTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTc                                    <  2:1244146/140‑1 (MQ=255)
                                                                                                    ggCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCttt                                 >  1:725604/1‑140 (MQ=255)
                                                                                                    ggCACCTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCttt                                 <  2:947783/140‑1 (MQ=255)
                                                                                                    ggCACCGGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCttt                                 >  2:1075376/1‑140 (MQ=255)
                                                                                                         cTGGGAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAg                            <  2:637711/140‑1 (MQ=255)
                                                                                                         cTGGGAAATCTTATCGGCAACGACCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAg                            <  1:1792341/140‑1 (MQ=255)
                                                                                                           gggAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCg                          >  2:1488071/1‑140 (MQ=255)
                                                                                                            ggAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCt                                       >  1:933133/1‑126 (MQ=255)
                                                                                                            ggAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCt                                       <  2:933133/126‑1 (MQ=255)
                                                                                                             gAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGt                        <  1:1766345/140‑1 (MQ=255)
                                                                                                             gAAATCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGt                        <  2:955177/140‑1 (MQ=255)
                                                                                                                 tCTTATCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGt                    >  1:1122413/1‑140 (MQ=255)
                                                                                                                      tCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCa                             <  1:557382/126‑1 (MQ=255)
                                                                                                                      tCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCa                             >  2:557382/1‑126 (MQ=255)
                                                                                                                      tCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCAt               <  1:1550817/140‑1 (MQ=255)
                                                                                                                      tCGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCAt               <  1:821288/140‑1 (MQ=255)
                                                                                                                       cGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATc              >  1:2066673/1‑140 (MQ=255)
                                                                                                                       cGGCAACGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATc              >  1:601129/1‑140 (MQ=255)
                                                                                                                           aaCGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGa          <  1:46318/140‑1 (MQ=255)
                                                                                                                           aaCGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGa          >  1:1238936/1‑140 (MQ=255)
                                                                                                                            aCGTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGAt         <  1:110808/140‑1 (MQ=255)
                                                                                                                             agTCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGATg        <  2:849228/139‑1 (MQ=255)
                                                                                                                               tCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGATGGt      <  1:1494452/140‑1 (MQ=255)
                                                                                                                               tCCATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGATGGt      >  2:1024700/1‑140 (MQ=255)
                                                                                                                                 cATGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGATGGTGc    <  1:542261/140‑1 (MQ=255)
                                                                                                                                   tGCATTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCTCGATGGTGCCa  >  2:1682070/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                        
CAAGATTGCCCGCGCGAGAAATCATTACGGCAGGACTTTAGCGGAAAGGATAACTACCGGTTTTGACGGCACATTCTGGTACGGACCAACGTCATGAGTCGGCACCTGGGAAATCTTATCGGCAACGTCCATGCCTTTCACCACTTTACCAAATACCGCGTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGTGCCATCGCGATGGTGCCA  >  NC_000913/3491701‑3491971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A