Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,497,064	C→A	A21E (GCA→GAA)	nirC →	nitrite transporter NirC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,497,064	0	C	A	100.0%	539.3 / NA	154	A21E (GCA→GAA)	nirC	nitrite transporter NirC
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (91/63); total (91/63)

Only 100 of 168 total aligned reads displayed.

ATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGT  >  NC_000913/3496928‑3497200

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  1:589637/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  1:110447/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  2:21684/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  2:2100146/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  1:1384153/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  1:1924471/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  2:204109/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  2:1450353/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGaaaa                                                                                                                                       >  1:16519/1‑140 (MQ=255)

atCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGCTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCTTGTCGGaaaa                                                                                                                                       >  2:1829727/1‑140 (MQ=255)

 tCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGTGCGCATTGCACGCCTGTCGGAAAAt                                                                                                                                      >  2:182244/1‑140 (MQ=255)

  cTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATa                                                                                                                                     >  1:12804/1‑140 (MQ=255)

     cGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAAcc                                                                                                                                  >  1:805429/1‑140 (MQ=255)

               cAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCtt                                                                                                                        >  1:594082/1‑140 (MQ=255)

                aGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCttt                                                                                                                       <  2:1644879/140‑1 (MQ=255)

                  gACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTg                                                                                                                     >  2:2126361/1‑140 (MQ=255)

                    cATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTggg                                                                                                                   >  1:180250/1‑140 (MQ=255)

                     aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGt                                                                                                                  <  2:720837/140‑1 (MQ=255)

                     aTTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGt                                                                                                                  <  1:1280315/140‑1 (MQ=255)

                       tttttAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCa                                                                                                                >  2:656028/1‑140 (MQ=255)

                       tttttAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCa                                                                                                                >  2:584534/1‑140 (MQ=255)

                              aCTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGc                                                                                                         >  1:1492010/1‑140 (MQ=255)

                               cTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGcc                                                                                                        >  1:947694/1‑140 (MQ=255)

                                 ttttGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCAt                                                                                                      >  1:207466/1‑140 (MQ=255)

                                    tGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggc                                                                                                   >  1:1907006/1‑140 (MQ=255)

                                         tATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATggcgggcg                                                                                              <  2:541910/140‑1 (MQ=255)

                                               ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtg                                                                                        <  2:903374/140‑1 (MQ=255)

                                               ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtg                                                                                        <  2:776035/140‑1 (MQ=255)

                                                tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtgt                                                                                       <  2:626758/140‑1 (MQ=255)

                                                tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtgt                                                                                       >  2:527958/1‑140 (MQ=255)

                                                tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtgt                                                                                       <  2:947694/140‑1 (MQ=255)

                                                tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTAtgt                                                                                       <  2:1102893/140‑1 (MQ=255)

                                                      tATTTTTTAAAGGATAATCAAATGTTTAAAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCt                                                                                 <  2:2028949/140‑1 (MQ=255)

                                                           tttAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGa                                                                            <  2:589637/140‑1 (MQ=255)

                                                                      aTCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGAtt                                                                 >  2:1949732/1‑140 (MQ=255)

                                                                            tGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACg                                                           <  2:1638318/140‑1 (MQ=255)

                                                                              tttACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCt                                                         >  2:850781/1‑140 (MQ=255)

                                                                                tACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTACACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCg                                                       >  2:292248/1‑140 (MQ=255)

                                                                                        cTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTg                                               >  1:519539/1‑140 (MQ=255)

                                                                                          aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCt                                             <  2:434543/140‑1 (MQ=255)

                                                                                          aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCt                                             <  1:204109/140‑1 (MQ=255)

                                                                                          aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCt                                             <  1:578007/140‑1 (MQ=255)

                                                                                          aTTAATAAGTGTACGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATAATCCTGATTTTCACGCTCGGTAATTTGCt                                             <  1:1902609/140‑1 (MQ=255)

                                                                                           ttAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTTGGATTATCCTGATTTTCACTCTCGCGCATTTGCtt                                            >  2:284348/1‑139 (MQ=255)

                                                                                            taataaGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCg                                           <  2:1384153/140‑1 (MQ=255)

                                                                                                 aGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTg                                               >  1:212802/1‑131 (MQ=255)

                                                                                                 aGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTg                                               <  2:212802/131‑1 (MQ=255)

                                                                                                 aGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatcca                                      >  1:54043/1‑140 (MQ=255)

                                                                                                 aGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatcca                                      >  2:1605406/1‑140 (MQ=255)

                                                                                                 aGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatcca                                      >  1:203931/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTTCTCGatccatc                                    >  1:918219/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  1:530496/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  2:1167027/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  2:1271553/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  1:495236/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  1:1004272/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  2:152011/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  2:1520205/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  2:1637291/1‑140 (MQ=255)

                                                                                                   tgtgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGGCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatc                                    >  2:488381/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTTGGGTCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatcct                                  >  2:643607/1‑139 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatcct                                  >  2:1001125/1‑139 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGatccatcct                                  >  2:803660/1‑139 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:1142796/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:287991/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  2:490172/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:1590655/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:3628/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:374483/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:506044/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:759964/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  2:1020384/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:775004/1‑140 (MQ=255)

                                                                                                     tgCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGGGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                  >  1:1917718/1‑140 (MQ=255)

                                                                                                       cGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTa                                >  2:907401/1‑140 (MQ=255)

                                                                                                       cGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTa                                >  2:72944/1‑140 (MQ=255)

                                                                                                       cGGCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTa                                <  2:1142796/140‑1 (MQ=255)

                                                                                                        ggCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTAc                               <  1:1639877/140‑1 (MQ=255)

                                                                                                         gCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACg                              <  1:1167027/140‑1 (MQ=255)

                                                                                                         gCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACg                              <  2:495236/140‑1 (MQ=255)

                                                                                                         gCTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACg                              <  1:1520205/140‑1 (MQ=255)

                                                                                                          cTAACGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGc                             >  2:131296/1‑140 (MQ=255)

                                                                                                             aCGCTGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCt                          <  2:250356/140‑1 (MQ=255)

                                                                                                                 tGCGCGCATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGGTCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTgt                      >  2:980298/1‑139 (MQ=255)

                                                                                                                   cgcgcATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTg                    >  1:913020/1‑140 (MQ=255)

                                                                                                                    gcgcATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGa                   >  1:1147485/1‑140 (MQ=255)

                                                                                                                    gcgcATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGGATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTgt                   >  2:125449/1‑139 (MQ=255)

                                                                                                                     cgcATTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGAt                  <  1:1020384/140‑1 (MQ=255)

                                                                                                                        aTTGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATggg               <  1:467009/140‑1 (MQ=255)

                                                                                                                         ttGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCG‑ACGCCCTTTGGTGATGGgcg             <  2:1888869/140‑1 (MQ=255)

                                                                                                                          tGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGgcg             <  2:508240/140‑1 (MQ=255)

                                                                                                                          tGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGgcg             <  2:207466/140‑1 (MQ=255)

                                                                                                                          tGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGgcg             <  2:1924471/140‑1 (MQ=255)

                                                                                                                          tGCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGgcg             <  1:654217/140‑1 (MQ=255)

                                                                                                                           gCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGgcgc            <  1:21684/140‑1 (MQ=255)

                                                                                                                           gCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGgcgc            <  1:182244/140‑1 (MQ=255)

                                                                                                                           gCACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGgcgc            <  1:1637291/140‑1 (MQ=255)

                                                                                                                            cACGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGcgcg           <  2:805429/140‑1 (MQ=255)

                                                                                                                              cGCCTGTCGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGAc         <  1:2100146/140‑1 (MQ=255)

                                                                                                                                  tGTTGGAAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCttt     >  2:616262/1‑140 (MQ=255)

ATCTTCGGTATATTGCAGGACATTTTTTAAACTTTTTGTTTTATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGT  >  NC_000913/3496928‑3497200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A