Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,565,112	G→T	G490G (GGC→GGA)	glgP ←	glycogen phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,565,112	0	G	T	99.2%	455.0 / NA	127	G490G (GGC→GGA)	glgP	glycogen phosphorylase
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (71/55); minor base A (1/0); total (72/55)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 130 total aligned reads displayed.

TCAGCTGCTGGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCA  >  NC_000913/3564976‑3565248

tCAGCTGCTGGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTccc                                                                                                                                       <  1:205228/140‑1 (MQ=255)

tCAGCTGCTGGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTccc                                                                                                                                       >  1:267795/1‑140 (MQ=255)

 cAGCTGCTGGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCa                                                                                                                                      <  1:65054/140‑1 (MQ=255)

  aGCTGCTGGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAg                                                                                                                                     >  1:1832015/1‑140 (MQ=255)

    ctgctgGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGgt                                                                                                                                   >  2:30443/1‑140 (MQ=255)

      gctgGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGgtgt                                                                                                                                 <  2:529408/140‑1 (MQ=255)

         gggCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCg                                                                                                                              <  1:552114/140‑1 (MQ=255)

          ggCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGt                                                                                                                             >  1:922301/1‑140 (MQ=255)

              atatACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAg                                                                                                                         >  1:422999/1‑140 (MQ=255)

               tataCTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGACCCAGGTGTTCTTCCAGc                                                                                                                        >  1:1449298/1‑140 (MQ=255)

                ataCTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCa                                                                                                                       <  2:682549/140‑1 (MQ=255)

                    tctGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGc                                                                                                                   >  1:1343487/1‑140 (MQ=255)

                      tGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTg                                                                                                                 <  2:1301408/140‑1 (MQ=255)

                      tGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTg                                                                                                                 >  2:1312055/1‑140 (MQ=255)

                        ccAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATAACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGaa                                                                                                               >  2:1702066/1‑140 (MQ=255)

                         cAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGaaa                                                                                                              >  1:1731336/1‑140 (MQ=255)

                         cAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGaaa                                                                                                              >  1:1561366/1‑140 (MQ=255)

                           gACGCTTTTTGTTCTCCAGCTTCGCCTGATGGACAGCGTGATTTACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGc                                                                                                            >  2:1131003/1‑140 (MQ=255)

                            aCGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCg                                                                                                           <  1:1828138/140‑1 (MQ=255)

                            aCGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCg                                                                                                           <  2:942851/140‑1 (MQ=255)

                            aCGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCg                                                                                                           <  1:1612646/140‑1 (MQ=255)

                             cGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGa                                                                                                          >  2:1091481/1‑140 (MQ=255)

                              gCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGAt                                                                                                         <  1:895456/140‑1 (MQ=255)

                                      ttCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGc                                                                                                 <  1:603726/140‑1 (MQ=255)

                                      ttCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGc                                                                                                 <  2:1561366/140‑1 (MQ=255)

                                             acTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCgcc                                                                                          <  2:595424/139‑1 (MQ=255)

                                              cTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCgcca                                                                                         >  2:1234141/1‑140 (MQ=255)

                                              cTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCgcca                                                                                         <  2:1832015/140‑1 (MQ=255)

                                                   ccTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGccagccag                                                                                    >  2:277789/1‑140 (MQ=255)

                                                       aTGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGAc                                                                                >  1:724042/1‑140 (MQ=255)

                                                        tGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGAcg                                                                               <  1:1091481/140‑1 (MQ=255)

                                                        tGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGAcg                                                                               <  2:624618/140‑1 (MQ=255)

                                                          cacaGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGAcgcg                                                                             <  2:724042/140‑1 (MQ=255)

                                                          cacaGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGAcgcg                                                                             <  1:30443/140‑1 (MQ=255)

                                                            aaGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACgcggc                                                                           <  2:505052/139‑1 (MQ=255)

                                                             aGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACgcggcg                                                                          <  2:1343487/140‑1 (MQ=255)

                                                              gCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGt                                                                         >  1:1251882/1‑140 (MQ=255)

                                                              gCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGt                                                                         >  1:1605939/1‑140 (MQ=255)

                                                               cGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTc                                                                        >  2:511681/1‑140 (MQ=255)

                                                                 tGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTcac                                                                      >  2:1045834/1‑140 (MQ=255)

                                                                 tGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTcac                                                                      >  2:1707901/1‑140 (MQ=255)

                                                                  gATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTcaca                                                                     <  1:1424950/140‑1 (MQ=255)

                                                                   aTTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCacac                                                                    >  2:1167758/1‑140 (MQ=255)

                                                                   aTTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCacac                                                                    >  2:1484076/1‑140 (MQ=255)

                                                                   aTTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCacac                                                                    >  2:373775/1‑140 (MQ=255)

                                                                    ttAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACAcc                                                                   <  2:422999/140‑1 (MQ=255)

                                                                    ttAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACAcc                                                                   >  1:103827/1‑140 (MQ=255)

                                                                     tAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcg                                                                  <  1:1058778/140‑1 (MQ=255)

                                                                       aCCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcgtt                                                                >  2:1018453/1‑140 (MQ=255)

                                                                         cATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcgttgg                                                              >  1:1004121/1‑140 (MQ=255)

                                                                          aTTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcgttggt                                                             <  1:1310424/140‑1 (MQ=255)

                                                                            tGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcgttggtga                                                           >  2:915220/1‑140 (MQ=255)

                                                                             gggAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcgttggtgac                                                          <  1:373775/140‑1 (MQ=255)

                                                                             gggAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcgttggtgac                                                          >  1:1524620/1‑140 (MQ=255)

                                                                                 aaTCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGACAGCGACGCGGCGTCACACcgttggtgacgttg                                                      >  1:1168571/1‑140 (MQ=255)

                                                                                     acaGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACcgttggtgacgttggtga                                                  >  1:1181589/1‑140 (MQ=255)

                                                                                      caGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGaa                                                 <  1:1167758/140‑1 (MQ=255)

                                                                                       aGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGaaa                                                >  1:1082348/1‑140 (MQ=255)

                                                                                         tgttgtTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTTCCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACg                                              >  1:1503342/1‑140 (MQ=255)

                                                                                         tgttggTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACg                                              >  2:1701525/1‑140 (MQ=255)

                                                                                            tgttgCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAcc                                           >  2:788775/1‑140 (MQ=255)

                                                                                             gttgCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAccc                                          >  2:1040337/1‑140 (MQ=255)

                                                                                             gttgCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGAccc                                          >  1:1476012/1‑140 (MQ=255)

                                                                                              ttgCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCg                                         >  2:1815790/1‑140 (MQ=255)

                                                                                              ttgCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGACGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCg                                         >  2:1371201/1‑140 (MQ=255)

                                                                                               tgCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCgg                                        >  2:44466/1‑140 (MQ=255)

                                                                                                gCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCggg                                       <  2:1588340/140‑1 (MQ=255)

                                                                                                gCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCggg                                       >  2:1227287/1‑140 (MQ=255)

                                                                                                gCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCggg                                       <  2:1164956/140‑1 (MQ=255)

                                                                                                   gCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAg                                    >  1:1016810/1‑140 (MQ=255)

                                                                                                   gCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAg                                    >  1:1855964/1‑140 (MQ=255)

                                                                                                     tCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGAt                                  >  1:152580/1‑140 (MQ=255)

                                                                                                     tCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGAt                                  >  1:1474310/1‑140 (MQ=255)

                                                                                                     tCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGAt                                  >  2:1871219/1‑140 (MQ=255)

                                                                                                       aTTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGAttt                                >  2:1443899/1‑140 (MQ=255)

                                                                                                          aaGCAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGTAAGATTTTCg                             <  1:922541/140‑1 (MQ=255)

                                                                                                             cAGGCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCaa                          <  1:1701525/140‑1 (MQ=255)

                                                                                                               ggCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAg                        <  1:705015/140‑1 (MQ=255)

                                                                                                                gCTAGGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGt                       >  2:811075/1‑140 (MQ=255)

                                                                                                                gCTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGt                       >  1:1389822/1‑140 (MQ=255)

                                                                                                                 cTAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTc                      >  1:381846/1‑140 (MQ=255)

                                                                                                                  tAAGGTCGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCg                     <  1:1707901/140‑1 (MQ=255)

                                                                                                                        cGGTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaac               <  1:1815790/140‑1 (MQ=255)

                                                                                                                          gTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaacaa             >  1:1012361/1‑140 (MQ=255)

                                                                                                                          gTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaacaa             >  2:576657/1‑140 (MQ=255)

                                                                                                                          gTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaacaa             >  1:198728/1‑140 (MQ=255)

                                                                                                                          gTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaacaa             >  1:1885701/1‑140 (MQ=255)

                                                                                                                          gTGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCAGCAaacaa             >  2:1796194/1‑140 (MQ=255)

                                                                                                                           tGCGCCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAaacaac            >  2:190988/1‑140 (MQ=255)

                                                                                                                            gcgcCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACg           >  2:1880081/1‑140 (MQ=255)

                                                                                                                              gcCAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGAt         <  1:700100/140‑1 (MQ=255)

                                                                                                                               ccAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGAtt        >  2:1793492/1‑140 (MQ=255)

                                                                                                                               ccAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGA‑‑TTCGCAAAGTCGGCAAACAACGATTGc      <  1:1381964/140‑1 (MQ=255)

                                                                                                                                cAGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTg       <  1:1312055/140‑1 (MQ=255)

                                                                                                                                 aGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGc      <  2:1016810/140‑1 (MQ=255)

                                                                                                                                 aGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGc      <  2:922301/140‑1 (MQ=255)

                                                                                                                                 aGTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGc      <  2:1476012/140‑1 (MQ=255)

                                                                                                                                  gTTACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCa     <  1:277789/140‑1 (MQ=255)

                                                                                                                                   ttACGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCAc    <  2:1251882/140‑1 (MQ=255)

                                                                                                                                     aCGTCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCa  <  1:1793492/140‑1 (MQ=255)

TCAGCTGCTGGGCGATATACTCTGCCAGACGCTTTTTGTTCTCCAGCTTCGCCTGATGCACAGCGTGATTAACCATTGGGAAATCACAGTGTTGTTGCAGCTCATTAAGCAGGCTAAGGTCGGTGCGCCAGTTACGGCCCAGGTGTTCGTCCAGCACGGCTGAAAGCGATGGGTTCGCTACCGCCAGCCAGCGACGCGGCGTCACACCGTTGGTGACGTTGGTGAAACGACCCGGGAAGATTTTCGCAAAGTCGGCAAACAACGATTGCACCA  >  NC_000913/3564976‑3565248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A