Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,617,537	G→T	A175S (GCA→TCA)	nikD →	Ni(2(+)) ABC transporter ATP binding subunit NikD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,617,537	0	G	T	100.0%	297.6 / NA	84	A175S (GCA→TCA)	nikD	Ni(2(+)) ABC transporter ATP binding subunit NikD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (43/41); total (43/41)

ACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGACGGTAAGATTGT  >  NC_000913/3617400‑3617673

aCGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATca                                                                                                                                        <  2:1882095/140‑1 (MQ=255)

 cgccgcGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATcac                                                                                                                                       >  1:1091736/1‑140 (MQ=255)

 cgccgcGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATcac                                                                                                                                       >  2:1068744/1‑140 (MQ=255)

  gccgcGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATcaca                                                                                                                                      >  2:1633806/1‑140 (MQ=255)

  gccgcGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATcaca                                                                                                                                      >  2:461600/1‑140 (MQ=255)

      cgcgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcg                                                                                                                                  >  2:134463/1‑140 (MQ=255)

      cgcgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcg                                                                                                                                  >  1:608039/1‑140 (MQ=255)

      cgcgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcg                                                                                                                                  >  1:1024611/1‑140 (MQ=255)

      cgcgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcg                                                                                                                                  >  2:996057/1‑140 (MQ=255)

       gcgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcgc                                                                                                                                 <  1:134463/140‑1 (MQ=255)

        cgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcgct                                                                                                                                >  2:722183/1‑139 (MQ=255)

        cgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcgcg                                                                                                                                <  1:1526004/140‑1 (MQ=255)

        cgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcgcg                                                                                                                                <  1:996057/140‑1 (MQ=255)

        cgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcgcg                                                                                                                                <  1:409904/140‑1 (MQ=255)

        cgcgTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGgcgcg                                                                                                                                <  2:1329465/140‑1 (MQ=255)

           gTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCAt                                                                                                                             <  1:13081/140‑1 (MQ=255)

           gTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCAt                                                                                                                             <  1:455637/140‑1 (MQ=255)

            gacTGCAGCTGTACCCGTTCGGGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATc                                                                                                                            <  2:816588/138‑1 (MQ=255)

                   gCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATc                                                                                                                     <  1:1766028/140‑1 (MQ=255)

                     tGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATctg                                                                                                                   <  1:227072/140‑1 (MQ=255)

                       tACCCGTTCGAGTTGAGCGGCGGCATGTTGCAGCGCATGTTGATTGCGAAGGCGGCGCTGTGCGAACCACCGATTATCATCGCAGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCAGCCTCGATctgct                                                                                                                 >  2:1129987/1‑140 (MQ=255)

                       tACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCTCGCATCCTCGATctgct                                                                                                                 >  2:242005/1‑140 (MQ=255)

                       tACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTT‑ACGTGGTATCACAGGCGCGCATCCTCGATctgctt                                                                                                                >  2:263268/1‑139 (MQ=255)

                          ccGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGa                                                                                                              <  2:1133970/140‑1 (MQ=255)

                          ccGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGa                                                                                                              <  1:379693/140‑1 (MQ=255)

                          ccGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTAAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGa                                                                                                              <  1:1291746/140‑1 (MQ=255)

                           cGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGaa                                                                                                             >  1:725228/1‑140 (MQ=255)

                             ttCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAg                                                                                                           >  1:400995/1‑140 (MQ=255)

                             ttCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAg                                                                                                           >  1:1823766/1‑140 (MQ=255)

                             ttCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAg                                                                                                           >  1:508113/1‑140 (MQ=255)

                                gagaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAt                                                                                                        <  2:112550/140‑1 (MQ=255)

                                gagaTGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGAATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAt                                                                                                        <  1:805767/140‑1 (MQ=255)

                                        cggcggCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaaa                                                                                                >  2:1559741/1‑140 (MQ=255)

                                        cggcggCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCaaa                                                                                                >  1:1582743/1‑140 (MQ=255)

                                            ggcATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACa                                                                                            <  1:266426/140‑1 (MQ=255)

                                            ggcATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACa                                                                                            <  1:1804638/140‑1 (MQ=255)

                                               aTGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAgc                                                                                         <  1:1068744/140‑1 (MQ=255)

                                                        cgcATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAt                                                                                >  2:417532/1‑140 (MQ=255)

                                                         gcATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtg                                                                               <  1:1111804/140‑1 (MQ=255)

                                                          cATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgc                                                                              >  1:1132706/1‑140 (MQ=255)

                                                            tgatgaTTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgctg                                                                            >  2:1649710/1‑140 (MQ=255)

                                                            tgatgaTTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgctg                                                                            >  1:1656885/1‑140 (MQ=255)

                                                            tgatgaTTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAAtgctg                                                                            >  1:1821894/1‑140 (MQ=255)

                                                               tgatTGCGATGGCGGTGCTGTGTGAATCGCCGTTTATCATCGCCGATGAACCGACCACCGAACTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGctgctg                                                                         <  2:1024611/140‑1 (MQ=255)

                                                               tgatTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGctgctg                                                                         <  2:991587/140‑1 (MQ=255)

                                                                 atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                                                       <  1:537704/140‑1 (MQ=255)

                                                                 atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                                                       <  2:205800/140‑1 (MQ=255)

                                                                 atTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                                                       <  2:1693521/140‑1 (MQ=255)

                                                                     cGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                                                       <  1:500616/136‑1 (MQ=255)

                                                                     cGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGt                                                                       >  2:500616/1‑136 (MQ=255)

                                                                     cGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTT‑ACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGAccc                                                                  <  1:263268/140‑1 (MQ=255)

                                                                      gATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCTACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGAccc                                                                  >  2:865551/1‑140 (MQ=255)

                                                                       aTGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGa                                                                     >  1:49397/1‑136 (MQ=255)

                                                                       aTGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGa                                                                     <  2:49397/136‑1 (MQ=255)

                                                                       aTGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCa                                                                 >  1:968490/1‑140 (MQ=255)

                                                                             gTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGatat                                                           <  2:52983/140‑1 (MQ=255)

                                                                                     tgAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTtg                                                   >  2:1194802/1‑140 (MQ=255)

                                                                                     tgAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTtg                                                   >  1:1182530/1‑140 (MQ=255)

                                                                                     tgAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGGATCACAGGCGTGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTtg                                                   >  1:1776344/1‑140 (MQ=255)

                                                                                      gAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTtgt                                                  >  1:1491837/1‑140 (MQ=255)

                                                                                         tCACCGTTTATCATCGCCGATGAACCTACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGgc                                               <  1:865551/140‑1 (MQ=255)

                                                                                                     atcGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGa                                   <  2:1491837/140‑1 (MQ=255)

                                                                                                     atcGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGa                                   <  2:712693/140‑1 (MQ=255)

                                                                                                     atcGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGACGCGTCTGGCGGa                                   <  2:608039/140‑1 (MQ=255)

                                                                                                       cGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATg                                 <  1:417532/140‑1 (MQ=255)

                                                                                                       cGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATg                                 >  2:1875180/1‑140 (MQ=255)

                                                                                                       cGCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATg                                 >  1:99835/1‑140 (MQ=255)

                                                                                                        gCCGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGa                                <  2:1582743/140‑1 (MQ=255)

                                                                                                         ccGATGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGAc                               >  1:276237/1‑140 (MQ=255)

                                                                                                            aTGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTg                            <  1:691842/140‑1 (MQ=255)

                                                                                                             tGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTgg                           >  1:959101/1‑140 (MQ=255)

                                                                                                             tGAACCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTgg                           >  2:1146112/1‑140 (MQ=255)

                                                                                                               aaCCGACCACCGACCTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCg                         <  1:1199883/140‑1 (MQ=255)

                                                                                                                  cgaccaccgaccTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTg                      <  2:1132706/140‑1 (MQ=255)

                                                                                                                        ccgaccTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCt                <  1:1559741/140‑1 (MQ=255)

                                                                                                                        ccgaccTTGACGTGGTATCACAGGCCCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCt                <  1:242005/140‑1 (MQ=255)

                                                                                                                         cgaccTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTg               >  1:825272/1‑140 (MQ=255)

                                                                                                                         cgaccTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTg               >  1:823025/1‑140 (MQ=255)

                                                                                                                         cgaccTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTg               >  2:1738126/1‑140 (MQ=255)

                                                                                                                           accTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGAc             >  2:1567211/1‑140 (MQ=255)

                                                                                                                           accTTGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGAc             >  2:254884/1‑140 (MQ=255)

                                                                                                                              ttGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGACGGt          <  1:254884/140‑1 (MQ=255)

                                                                                                                               tGACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGACGGTa         >  1:1181713/1‑140 (MQ=255)

                                                                                                                                gACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGACGGTaa        <  2:508113/140‑1 (MQ=255)

                                                                                                                                gACGTGGTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGACGGTaa        >  1:1435141/1‑140 (MQ=255)

                                                                                                                                      gTATCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGACGGTAAGATTGt  >  1:60529/1‑140 (MQ=255)

ACGCCGCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGATGTCTGACGGTAAGATTGT  >  NC_000913/3617400‑3617673

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A