Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F48 I1 R1 508 125.6 4303852 99.2% 4269421 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,627,428 C→A R704L (CGC→CTC)  rbbA ← ribosome‑associated ATPase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,627,4280CA100.0% 256.6 / NA 76R704L (CGC→CTC) rbbAribosome‑associated ATPase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (39/37);  total (39/37)

TTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCGTCGAT  >  NC_000913/3627293‑3627564
                                                                                                                                       |                                                                                                                                        
ttGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGt                                                                                                                                      <  2:2042210/140‑1 (MQ=255)
  gATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGtct                                                                                                                                    <  2:383915/140‑1 (MQ=255)
  gATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGtct                                                                                                                                    <  1:838703/140‑1 (MQ=255)
  gATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGtct                                                                                                                                    <  1:433910/140‑1 (MQ=255)
   aTAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGtctc                                                                                                                                   >  1:2000254/1‑140 (MQ=255)
          aCCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATtc                                                                                                                            >  2:1433623/1‑140 (MQ=255)
               aGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAg                                                                                                                       >  1:534364/1‑140 (MQ=255)
                    tttttCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGc                                                                                                                  >  1:1212417/1‑140 (MQ=255)
                     ttttCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCt                                                                                                                 <  2:652397/140‑1 (MQ=255)
                     ttttCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCt                                                                                                                 >  1:505027/1‑140 (MQ=255)
                      tttCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCtt                                                                                                                <  1:2151008/140‑1 (MQ=255)
                               ccacGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCg                                                                                                       <  1:810874/140‑1 (MQ=255)
                                  cGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCgggg                                                                                                    >  1:1667045/1‑139 (MQ=255)
                                    cTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGgtgt                                                                                                  <  2:1153901/140‑1 (MQ=255)
                                          gcgcTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGCttt                                                                                            >  2:999184/1‑139 (MQ=255)
                                            gcTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTc                                                                                          >  2:2005860/1‑140 (MQ=255)
                                             cTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCg                                                                                         >  1:279790/1‑140 (MQ=255)
                                             cTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCg                                                                                         >  1:624142/1‑140 (MQ=255)
                                             cTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCg                                                                                         >  1:782482/1‑140 (MQ=255)
                                             cTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCg                                                                                         >  1:961214/1‑140 (MQ=255)
                                             cTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCg                                                                                         >  2:1006468/1‑140 (MQ=255)
                                             cTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGGGTCGATTGTCg                                                                                         >  2:1581144/1‑140 (MQ=255)
                                             cTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAAGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCAGGTGTCGGTTGtac                                                                                         >  2:349666/1‑138 (MQ=255)
                                              ttAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCgg                                                                                        <  2:2071270/140‑1 (MQ=255)
                                               tAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGc                                                                                       <  2:912067/140‑1 (MQ=255)
                                               tAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGc                                                                                       <  1:289289/140‑1 (MQ=255)
                                                    ttGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGcc                                                                                  >  2:1479108/1‑140 (MQ=255)
                                                    ttGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGcc                                                                                  <  1:1362120/140‑1 (MQ=255)
                                                    ttGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGcc                                                                                  >  1:1113404/1‑140 (MQ=255)
                                                    ttGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGcc                                                                                  <  2:624142/140‑1 (MQ=255)
                                                     tGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCca                                                                                 >  2:470709/1‑140 (MQ=255)
                                                      gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCcac                                                                                <  1:470709/140‑1 (MQ=255)
                                                      gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCcac                                                                                <  2:1113404/140‑1 (MQ=255)
                                                      gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCcac                                                                                <  2:1049990/140‑1 (MQ=255)
                                                      gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCcac                                                                                <  1:1006468/140‑1 (MQ=255)
                                                      gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCcac                                                                                <  1:1640411/140‑1 (MQ=255)
                                                      gACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCcac                                                                                <  1:1437211/140‑1 (MQ=255)
                                                            atcatcatcAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTg                                                                          >  1:1204801/1‑140 (MQ=255)
                                                                tcatcaGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAAc                                                                      <  2:1667045/140‑1 (MQ=255)
                                                                 catcaGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTTTCGATTGTCGGCTCCCCACATCCTGTaaac                                                                     >  2:138911/1‑138 (MQ=255)
                                                                 catcaGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAAcc                                                                     >  1:1698949/1‑140 (MQ=255)
                                                                  atcaGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCa                                                                    <  1:138911/140‑1 (MQ=255)
                                                                   tcaGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAg                                                                   <  1:1806208/140‑1 (MQ=255)
                                                                     agcagAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGcc                                                                 >  2:1021517/1‑139 (MQ=255)
                                                                       cagAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTTTAACCAGctct                                                               >  2:1875150/1‑140 (MQ=255)
                                                                       cagAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGctct                                                               <  2:1798863/140‑1 (MQ=255)
                                                                       cagAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGctct                                                               >  1:1641738/1‑140 (MQ=255)
                                                                       cagAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGctct                                                               >  1:1072099/1‑140 (MQ=255)
                                                                       cagAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGctct                                                               >  1:2042298/1‑140 (MQ=255)
                                                                       cagAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGctct                                                               >  1:140530/1‑140 (MQ=255)
                                                                        agAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTTTCGGCTCGCCACATCCTGTAACCCGctctt                                                              >  2:313986/1‑139 (MQ=255)
                                                                         gAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTa                                                                        <  2:1346267/129‑1 (MQ=255)
                                                                         gAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTa                                                                        >  1:1346267/1‑129 (MQ=255)
                                                                          aaGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGt                                                            >  1:587895/1‑140 (MQ=255)
                                                                          aaGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGGCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGt                                                            >  1:205031/1‑140 (MQ=255)
                                                                          aaGCGGGATCACCGCCGGAACAATCGCTGACAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTAGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGt                                                            >  1:27489/1‑140 (MQ=255)
                                                                            gCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGc                                                          <  1:1111840/140‑1 (MQ=255)
                                                                             cGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCa                                                         <  2:1215574/140‑1 (MQ=255)
                                                                                 aTCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGTTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGc                                                     <  2:227745/140‑1 (MQ=255)
                                                                                 aTCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGc                                                     <  2:1072099/140‑1 (MQ=255)
                                                                                    aCCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTg                                                  <  2:1204801/140‑1 (MQ=255)
                                                                                    aCCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGGGTCGATTGTCGGCTCGCCCCATCCTGTAAACAGCTCTGGTGCATGGCCtc                                                  >  2:2137275/1‑139 (MQ=255)
                                                                                           gAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCCCATCCTGGAACCAGCTCTGGTGCATGGCCCGCACGTaa                                           >  1:1446375/1‑140 (MQ=255)
                                                                                                   gCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTTCACGTAACCTTTTAc                                   >  1:1094633/1‑140 (MQ=255)
                                                                                                   gCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTAc                                   <  2:1641738/140‑1 (MQ=255)
                                                                                                   gCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTAc                                   <  2:140530/140‑1 (MQ=255)
                                                                                                     tGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCCCATTCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCg                                 >  2:474922/1‑140 (MQ=255)
                                                                                                         aGGCTTTTTACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTc                             >  2:1885717/1‑140 (MQ=255)
                                                                                                             tttttACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCa                         <  1:2005860/140‑1 (MQ=255)
                                                                                                             tttttACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCa                         <  2:1987754/140‑1 (MQ=255)
                                                                                                             tttttACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCa                         <  2:2091922/140‑1 (MQ=255)
                                                                                                             tttttACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCa                         <  1:1479108/140‑1 (MQ=255)
                                                                                                                ttACGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACgg                      <  1:2137275/140‑1 (MQ=255)
                                                                                                                  aCGTCCGGGTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCt                    <  1:2148980/140‑1 (MQ=255)
                                                                                                                         ggTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATc             >  1:1942941/1‑140 (MQ=255)
                                                                                                                         ggTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATc             >  1:404510/1‑140 (MQ=255)
                                                                                                                          gTTATAGCGATAGAGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCg            >  1:1193893/1‑140 (MQ=255)
                                                                                                                               agcgatagagCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCg       >  1:19581/1‑140 (MQ=255)
                                                                                                                               agcgatagagCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCg       <  2:1942941/140‑1 (MQ=255)
                                                                                                                                   atagagCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACCTCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCGTCGa   >  2:720507/1‑140 (MQ=255)
                                                                                                                                   atagagCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCGTCGa   >  1:1365226/1‑140 (MQ=255)
                                                                                                                                   atagagCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCGTCGa   >  1:1497488/1‑140 (MQ=255)
                                                                                                                                    tagagCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCTCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCGTCGAt  >  2:1867101/1‑140 (MQ=255)
                                                                                                                                    tagagCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCGTCGAt  >  2:1419838/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACGTCCGGGTTATAGCGATAGCGCGTCTCAATATTCATCAGCCCGCTTTGGCTGGCGGGTGTCGATTGTCGGCTCGCCACATCCTGTAACCAGCTCTGGTGCATGGCCTGCACGTAACCTTTTACCGTTTCAGCACGGCTCGGCATCGCTCCGTCGAT  >  NC_000913/3627293‑3627564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A