Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F48 I1 R1	508	125.6	4303852	99.2%	4269421	139.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,629,279	G→T	P87Q (CCG→CAG)	rbbA ←	ribosome‑associated ATPase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,629,279	0	G	T	100.0%	296.9 / NA	86	P87Q (CCG→CAG)	rbbA	ribosome‑associated ATPase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (39/47); total (39/47)

AGCAGCTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCC  >  NC_000913/3629144‑3629414

agcagcTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCa                                                                                                                                     <  1:923304/140‑1 (MQ=255)

  cagcTCATTGATTCGCACTTCCCTCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGAAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCatt                                                                                                                                   >  2:144646/1‑138 (MQ=255)

  cagcTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGa                                                                                                                                   >  1:1669161/1‑140 (MQ=255)

            aTTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCgcggcg                                                                                                                         <  2:8665/140‑1 (MQ=255)

            aTTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCgcggcg                                                                                                                         <  1:714318/140‑1 (MQ=255)

            aTTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCgcggcg                                                                                                                         <  2:2136926/140‑1 (MQ=255)

               cGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATg                                                                                                                      <  1:652485/140‑1 (MQ=255)

                gCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGc                                                                                                                     >  2:938448/1‑140 (MQ=255)

                  aCTTCCCGCTTCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGGTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGTCGTCGCGGCGATGCtt                                                                                                                   <  2:255165/140‑1 (MQ=255)

                  aCTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCtt                                                                                                                   >  2:1413629/1‑140 (MQ=255)

                  aCTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCtt                                                                                                                   <  1:919652/140‑1 (MQ=255)

                      cccGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCggg                                                                                                               >  1:1451845/1‑140 (MQ=255)

                      cccGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCggg                                                                                                               <  2:1411915/140‑1 (MQ=255)

                       ccgctccgctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGt                                                                                                              <  2:1645495/140‑1 (MQ=255)

                            ccgctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCgcgc                                                                                                         >  2:344/1‑140 (MQ=255)

                            ccgctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCgcgc                                                                                                         >  1:389661/1‑140 (MQ=255)

                              gctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCat                                                                                                       >  2:117719/1‑140 (MQ=255)

                                tttGTCGTGACTGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCatat                                                                                                     >  2:2054135/1‑140 (MQ=255)

                                  tGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcg                                                                                                   <  2:1394435/140‑1 (MQ=255)

                                  tGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcg                                                                                                   <  2:2087331/140‑1 (MQ=255)

                                  tGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGAGTCGCGCATATcg                                                                                                   <  1:1413629/140‑1 (MQ=255)

                                   gTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgc                                                                                                  <  1:966463/140‑1 (MQ=255)

                                     cGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccg                                                                                                >  2:1546190/1‑140 (MQ=255)

                                       tGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCgccgcc                                                                                              <  1:938448/140‑1 (MQ=255)

                                         aCCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCa                                                                                            <  2:1451845/140‑1 (MQ=255)

                                         aCCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCa                                                                                            >  2:713570/1‑140 (MQ=255)

                                          ccGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAg                                                                                           <  1:117719/140‑1 (MQ=255)

                                          ccGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAg                                                                                           <  2:389661/140‑1 (MQ=255)

                                          ccGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAg                                                                                           <  1:588496/140‑1 (MQ=255)

                                          ccGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAg                                                                                           <  1:713570/140‑1 (MQ=255)

                                          acGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAg                                                                                           <  2:1750327/139‑1 (MQ=255)

                                            gAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGct                                                                                         <  1:1546190/140‑2 (MQ=255)

                                            gAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                                                                         >  2:1922216/1‑140 (MQ=255)

                                             aaCAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGTCGATGCGCTGTCAGACGTCGCAGCGATGTTTCGGGTCGCGCATATCGCCGCCCAGCAc                                                                                        >  2:2033060/1‑140 (MQ=255)

                                              aCAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                                                                                       >  2:1631357/1‑140 (MQ=255)

                                                       ggaAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTg                                                                              <  2:1103355/139‑1 (MQ=255)

                                                       cgaAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTg                                                                              <  1:1682976/140‑1 (MQ=255)

                                                         aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGcc                                                                            <  1:344/140‑1 (MQ=255)

                                                         aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGcc                                                                            <  1:1465698/140‑1 (MQ=255)

                                                         aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGcc                                                                            <  1:97070/140‑1 (MQ=255)

                                                         aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGcc                                                                            <  2:100311/140‑1 (MQ=255)

                                                         aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGcc                                                                            <  2:733344/140‑1 (MQ=255)

                                                         aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGcc                                                                            <  1:1561763/140‑1 (MQ=255)

                                                         aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGcc                                                                            <  2:1669161/140‑1 (MQ=255)

                                                                          aTACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCggg                                                           <  1:2033060/140‑1 (MQ=255)

                                                                                cGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGAcgcg                                                             >  1:111751/1‑132 (MQ=255)

                                                                                cGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGAcgcg                                                             <  2:111751/132‑1 (MQ=255)

                                                                                cGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCgg                                                     >  1:1571824/1‑140 (MQ=255)

                                                                                cGACAACGTGTGGAAGAGGTTTTTGCCCAGCCCCAGCGGCATCCAGGCGATGCGCTGGCAGACTACGCGGCGATGCTTCTGCACGCGCATATCGCCGCCCAGCACCATCACTTTCCCCTGTTCAATGACGCGGTCACCgt                                                     >  2:1301154/1‑139 (MQ=255)

                                                                                agACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCgg                                                     >  2:384332/2‑140 (MQ=255)

                                                                                 gACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGa                                                    >  1:2115062/1‑140 (MQ=255)

                                                                                  aCAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCgg                                                     >  1:2007895/1‑138 (MQ=255)

                                                                                  aCAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCgg                                                     <  2:2007895/138‑1 (MQ=255)

                                                                                  aCAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGaa                                                   >  1:142648/1‑140 (MQ=255)

                                                                                  aCAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGaa                                                   >  2:1674598/1‑140 (MQ=255)

                                                                                  aCAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGaa                                                   >  1:258350/1‑140 (MQ=255)

                                                                                  aCAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGaa                                                   >  2:342731/1‑140 (MQ=255)

                                                                                          tgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGa                                           >  2:1610373/1‑140 (MQ=255)

                                                                                            gTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGaca                                         >  1:1172877/1‑140 (MQ=255)

                                                                                             tAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGacaa                                        >  2:935908/1‑140 (MQ=255)

                                                                                                agGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGAcaacaa                                     >  2:2075256/1‑140 (MQ=255)

                                                                                                  gTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAg                                    >  2:1657086/1‑139 (MQ=255)

                                                                                                  gTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAg                                    <  1:1657086/139‑1 (MQ=255)

                                                                                                  gTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGc                                   >  2:515188/1‑140 (MQ=255)

                                                                                                     tttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCg                                >  1:331272/1‑140 (MQ=255)

                                                                                                       tGCCCAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGAc                              >  2:1752321/1‑140 (MQ=255)

                                                                                                           cAGCCCCTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTcc                          <  1:935908/140‑1 (MQ=255)

                                                                                                                ccTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACg                     <  2:1958860/140‑1 (MQ=255)

                                                                                                                ccTGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACg                     <  1:1922216/140‑1 (MQ=255)

                                                                                                                  tGCGGCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGcc                   >  2:853796/1‑140 (MQ=255)

                                                                                                                      gCATCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTcc               <  2:258350/140‑1 (MQ=255)

                                                                                                                        aTCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCgg             >  2:1384273/1‑140 (MQ=255)

                                                                                                                        aTCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCgg             >  2:589933/1‑140 (MQ=255)

                                                                                                                         tCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCggg            >  1:188214/1‑140 (MQ=255)

                                                                                                                         tCCAGGCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCggg            >  2:813950/1‑140 (MQ=255)

                                                                                                                            aGGCGATACGCTGGCAGACGTCGCGGCGATGCTTCGGGTGGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCa         >  1:1403927/1‑140 (MQ=255)

                                                                                                                              gCGATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAAt       <  1:853796/140‑1 (MQ=255)

                                                                                                                                gATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCa     >  1:138917/1‑140 (MQ=255)

                                                                                                                                gATGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCa     >  1:673260/1‑140 (MQ=255)

                                                                                                                                 aTGCGCTGGCAGACGTCGCGGCTATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAg    <  1:1797537/140‑1 (MQ=255)

                                                                                                                                 aTGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAg    >  1:2150479/1‑140 (MQ=255)

                                                                                                                                 aTGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAg    <  1:2054135/140‑1 (MQ=255)

                                                                                                                                 aTGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAg    <  2:1546603/140‑1 (MQ=255)

                                                                                                                                  tGCGCTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGc   <  1:813950/140‑1 (MQ=255)

                                                                                                                                   gcgcTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGcc  >  1:285258/1‑140 (MQ=255)

                                                                                                                                   gcgcTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGcc  <  2:2115062/140‑1 (MQ=255)

                                                                                                                                   gcgcTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGcc  <  2:673260/140‑1 (MQ=255)

                                                                                                                                   gcgcTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGcc  <  1:1626387/140‑1 (MQ=255)

                                                                                                                                   gcgcTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGcc  <  2:138917/140‑1 (MQ=255)

                                                                                                                                   gcgcTGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCAGGCCAATCAGcc  <  2:823654/140‑1 (MQ=255)

AGCAGCTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCC  >  NC_000913/3629144‑3629414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A