Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F48 I1 R1	56	123.4	4244010	99.1%	4205813	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,629,562	G→C	D347E (GAC→GAG)	yhiI ←	putative membrane fusion protein YhiI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,629,562	0	G	C	100.0%	360.0 / NA	93	D347E (GAC→GAG)	yhiI	putative membrane fusion protein YhiI
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (44/49); total (44/49)

Only 100 of 108 total aligned reads displayed.

CGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCA  >  NC_000913/3629426‑3629697

cGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCCCCCCGAAgtcctcc                                                                                                                                      >  2:1299756/1‑139 (MQ=255)

 gggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAg                                                                                                                                     >  1:420812/1‑140 (MQ=255)

  ggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAgg                                                                                                                                    >  1:866902/1‑140 (MQ=255)

  ggCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAgg                                                                                                                                    >  1:1390221/1‑140 (MQ=255)

   gCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGc                                                                                                                                   >  2:739233/1‑140 (MQ=255)

   gCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGc                                                                                                                                   >  1:1519241/1‑140 (MQ=255)

   gCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCCACCCACGGGGGCCTCAGGc                                                                                                                                   >  2:1111727/1‑140 (MQ=255)

     cGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCa                                                                                                                                 <  2:1683363/140‑1 (MQ=255)

     cGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCa                                                                                                                                 >  2:2028115/1‑140 (MQ=255)

     cGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCa                                                                                                                                 <  1:1673833/140‑1 (MQ=255)

     cGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCCTCCGGccc                                                                                                                                 >  2:358568/1‑139 (MQ=255)

        aaTATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGGTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGCCATTGGGGCAACCCCACCACGAGGGCCCCAAGCCACgg                                                                                                                              >  2:894722/1‑140 (MQ=255)

          aatCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGaa                                                                                                                            <  2:665086/139‑1 (MQ=255)

                  gTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCttca                                                                                                                    <  1:1799227/140‑1 (MQ=255)

                    gATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCttcatt                                                                                                                  >  2:312447/1‑140 (MQ=255)

                    gATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCttcatt                                                                                                                  <  1:1299756/140‑1 (MQ=255)

                      tatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGGACCCATTCCCGATGGGCCATTGCGGCAACCTCACCCCGGGGTCCTCCGGCCACGGAAGTTTttcattca                                                                                                                >  2:1511162/1‑140 (MQ=255)

                      tatTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAACAGTTCCAGATGCGTCATTTCGGCAACCTCACCACGAGGGCCTCAGGCCACGGAAGTTCttcattca                                                                                                                >  2:1057498/1‑140 (MQ=255)

                        ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCAcc                                                                                                              <  1:739233/140‑1 (MQ=255)

                        ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCAcc                                                                                                              <  1:1583583/140‑1 (MQ=255)

                        ttGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCAcc                                                                                                              <  1:1111727/140‑1 (MQ=255)

                           ttCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGc                                                                                                           >  1:71413/1‑140 (MQ=255)

                           ttCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGc                                                                                                           >  1:1779272/1‑140 (MQ=255)

                             cAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAc                                                                                                         >  1:1241371/1‑140 (MQ=255)

                             cAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAc                                                                                                         >  1:1634499/1‑140 (MQ=255)

                             cAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAc                                                                                                         >  1:813311/1‑140 (MQ=255)

                              aGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc                                                                                                        <  1:312447/140‑1 (MQ=255)

                              aGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc                                                                                                        <  2:438129/140‑1 (MQ=255)

                              aGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc                                                                                                        <  2:119801/140‑1 (MQ=255)

                              aGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc                                                                                                        <  2:549509/140‑1 (MQ=255)

                              aGCGCAACGGTTTTCCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcc                                                                                                        <  1:1949400/140‑1 (MQ=255)

                                cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcccc                                                                                                      >  2:1152975/1‑139 (MQ=255)

                                cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcccc                                                                                                      >  2:233455/1‑139 (MQ=255)

                                cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGGTCCCGATTCGTCATTGCGGCAACCTCCCCACCAGGGCCCCAGGCCACGGGAGTTCTTCATTCAccccggcccc                                                                                                      >  2:1304125/1‑133 (MQ=255)

                                cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGGTCCAGATGCGGCATTGCGGCCACCTCACCACGAGGGCCTCAGGCCACGGAAGTTCTTCATTCACCCGCAcccc                                                                                                      >  2:2070964/1‑139 (MQ=255)

                                cgcAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAAACAGTCCCAGATTCGCCATTGGCGGAACCTCACCACCAGGACCTCAGGCCCCGGAAGGTCTTTATTCACCCACAcccc                                                                                                      >  2:779661/1‑139 (MQ=255)

                                     cGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATTCGTCAATGCGGCAACCCCACCACGAGGGCCTCAGGCCACGGAAGGTCTTCATTTACCCCCACCCACCCtc                                                                                                 >  2:539283/1‑139 (MQ=255)

                                     cGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCCCACCCCCGCtt                                                                                                 >  2:1147774/1‑139 (MQ=255)

                                     cGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCCCGCtt                                                                                                 >  2:62672/1‑139 (MQ=255)

                                     cGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCCTCAGGCCACGGAAGTTCTTCATTCACCCCCACCCACGCTa                                                                                                 >  2:309039/1‑140 (MQ=255)

                                           ttCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCg                                                                                           <  2:1519241/140‑1 (MQ=255)

                                                tAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCaaa                                                                                      <  1:125988/140‑1 (MQ=255)

                                                tAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCaaa                                                                                      >  1:1125308/1‑140 (MQ=255)

                                                 aaTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAAc                                                                                     <  1:1695242/140‑1 (MQ=255)

                                                 aaTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAAc                                                                                     <  2:462445/140‑1 (MQ=255)

                                                 aaTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGGCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAAc                                                                                     >  2:1198568/1‑140 (MQ=255)

                                                  aTGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAAcc                                                                                    <  1:521467/140‑1 (MQ=255)

                                                      tGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGtt                                                                                >  1:770421/1‑140 (MQ=255)

                                                       ggCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGttt                                                                               >  2:2067471/1‑140 (MQ=255)

                                                       ggCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGttt                                                                               <  1:2067471/140‑1 (MQ=255)

                                                         cTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTg                                                                             <  2:394792/140‑1 (MQ=255)

                                                         cTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTg                                                                             <  1:1511162/140‑1 (MQ=255)

                                                          tCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGa                                                                            <  1:1152975/140‑1 (MQ=255)

                                                          tCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGa                                                                            <  2:1636143/140‑1 (MQ=255)

                                                           cACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           <  2:1385926/140‑1 (MQ=255)

                                                           cACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           <  1:1147774/140‑1 (MQ=255)

                                                           cACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           <  2:1125308/140‑1 (MQ=255)

                                                           cACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           <  1:1986922/140‑1 (MQ=255)

                                                           cACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           <  2:71413/140‑1 (MQ=255)

                                                           agttcccgccAGTTGCGCGACAGGCCGGAAGGGAACCAGTTCCAGATGCGTCATGGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCACACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           <  2:1792665/136‑1 (MQ=255)

                                                            ccgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACa                                                                          <  1:62672/139‑1 (MQ=255)

                                                            aCGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACa                                                                          <  1:539283/140‑1 (MQ=255)

                                                             cgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           <  2:1410393/138‑1 (MQ=255)

                                                             cgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGAc                                                                           >  1:1410393/1‑138 (MQ=255)

                                                             cgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACat                                                                         >  2:172643/1‑140 (MQ=255)

                                                             cgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACat                                                                         >  1:954055/1‑140 (MQ=255)

                                                             cgcccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACat                                                                         >  1:1116965/1‑140 (MQ=255)

                                                               cccgccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACatat                                                                       <  1:2028115/140‑1 (MQ=255)

                                                                   ccAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCa                                                                   >  1:371595/1‑140 (MQ=255)

                                                                     aGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGa                                                                 <  2:1264374/140‑1 (MQ=255)

                                                                      gTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAt                                                                <  2:310719/140‑1 (MQ=255)

                                                                          cgcgACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgctg                                                            <  2:1116965/140‑1 (MQ=255)

                                                                          cgcgACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgctg                                                            >  1:290774/1‑140 (MQ=255)

                                                                           gcgACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgctgc                                                           <  1:1198568/140‑1 (MQ=255)

                                                                           gcgACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGAtgctgc                                                           <  2:371595/140‑1 (MQ=255)

                                                                            cgACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAAACTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTTCAGATgctgct                                                          >  1:825138/1‑140 (MQ=255)

                                                                                 ggCGGGACGGGGAACAATTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGGTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGGTTTGACATATTTCAGATGCTGCTGGAga                                                     >  2:1545137/1‑139 (MQ=255)

                                                                                         gggaACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCgg                                             <  1:1863201/140‑1 (MQ=255)

                                                                                           gaACCAGGTCCAGAAGCGTCATTGCGGCAACCCCACCACGAGGGCCTCAGGGCACGGAAGCTCTTCATTTACCCCCACCCACCCTACGCCCCGCAAAACGGGTTTTACATATTTCAGATGCTGCTGGAGTAATTTCGGTg                                           >  2:503022/1‑140 (MQ=255)

                                                                                             aCCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTggg                                         >  2:1250704/1‑140 (MQ=255)

                                                                                               cAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGAt                                       <  2:770421/140‑1 (MQ=255)

                                                                                                aGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATa                                      >  1:332954/1‑140 (MQ=255)

                                                                                                       gATGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCtt                               <  1:779661/140‑1 (MQ=255)

                                                                                                         tGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTg                             <  1:1545137/140‑1 (MQ=255)

                                                                                                         tGCGTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTg                             >  1:1439959/1‑140 (MQ=255)

                                                                                                            gTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGa                            <  2:1208649/138‑1 (MQ=255)

                                                                                                            gTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGa                            >  1:1208649/1‑138 (MQ=255)

                                                                                                            gTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGAcg                          >  1:1050/1‑140 (MQ=255)

                                                                                                            gTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGAcg                          <  1:233455/140‑1 (MQ=255)

                                                                                                            gTCATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGAcg                          >  1:1002108/1‑140 (MQ=255)

                                                                                                              cATTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGAcgcg                        <  1:1250704/140‑1 (MQ=255)

                                                                                                               aTTGCGGCAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCgg                       <  2:290774/140‑1 (MQ=255)

                                                                                                                      cAACCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCa                >  1:249228/1‑140 (MQ=255)

                                                                                                                        aCCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGt              >  2:1540959/1‑140 (MQ=255)

                                                                                                                        aCCTCACCACGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGt              >  2:1095090/1‑140 (MQ=255)

                                                                                                                             accacGAGGTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAg         >  1:1091639/1‑140 (MQ=255)

                                                                                                                                    ggTCCTCAGGCCTCGGCAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAATCCTGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTTGGTTATGCGCTTTTTCGCGGAACATCAGTTTCAGCTGTTCa  >  2:2008715/1‑140 (MQ=255)

                                                                                                                                    ggTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCa  >  1:1511532/1‑140 (MQ=255)

                                                                                                                                    ggTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCa  >  2:1159903/1‑140 (MQ=255)

                                                                                                                                    ggTCCTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCCTTGACGCGGAACATCAGTTTCAGCCGTTCa  <  1:476554/140‑1 (MQ=255)

CGGGCCGGAATATCGAGAGTGATATTGTTCAGCGCAACGGTTTTTCCATAATGCTGGCTCACGCCCGCCAGTTGCGCGACAGGCGGGACGGGAACCAGTTCCAGATGCGTCATTGCGGCAACCTCACCACGAGGTCGTCAGGCCACGGAAGTTCTTCATTCACCCGCACCCACGCTACGCCCGGCAAACCGGTTTTGACATATTCCAGATGCTGCTGGAGTAATTCCGGTGGGATACGCGCTTTGACGCGGAACATCAGTTTCAGCCGTTCA  >  NC_000913/3629426‑3629697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A