Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F48 I1 R1 75 141.5 4784044 99.1% 4740987 139.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,629,955 G→T A216A (GCC→GCA)  yhiI ← putative membrane fusion protein YhiI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,629,9550GT100.0% 411.8 / NA 118A216A (GCC→GCA) yhiIputative membrane fusion protein YhiI
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (54/64);  total (54/64)

Only 100 of 118 total aligned reads displayed.

CGTGCCCGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGGGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTT  >  NC_000913/3629820‑3630091
                                                                                                                                         |                                                                                                                                        
cGTGCCCGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCtt                                                                                                                                      >  1:994139/1‑140 (MQ=255)
 gTGCCCGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCttt                                                                                                                                     <  2:833689/140‑1 (MQ=255)
  tGCCCGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCttt                                                                                                                                     >  1:20885/1‑139 (MQ=255)
  tGCCCGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCttt                                                                                                                                     <  2:20885/139‑1 (MQ=255)
   gCCCGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCa                                                                                                                                   >  2:397643/1‑140 (MQ=255)
    cccGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCAGCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAg                                                                                                                                  >  2:1992344/1‑140 (MQ=255)
    cccGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAg                                                                                                                                  >  1:1079900/1‑140 (MQ=255)
    cccGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAg                                                                                                                                  >  2:433735/1‑140 (MQ=255)
        ccTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCg                                                                                                                              <  1:2259252/140‑1 (MQ=255)
          tGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCAGCGCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCg                                                                                                                              <  2:1385587/140‑1 (MQ=255)
          tGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCt                                                                                                                            <  1:397643/140‑1 (MQ=255)
           gTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCCCCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTg                                                                                                                           <  2:53059/140‑1 (MQ=255)
           gTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTg                                                                                                                           <  2:986171/140‑1 (MQ=255)
           gTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTg                                                                                                                           <  2:1160466/140‑1 (MQ=255)
              cGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCa                                                                                                                        <  2:668478/140‑1 (MQ=255)
                 ttGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCg                                                                                                                     <  2:564036/140‑1 (MQ=255)
                   ggCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGat                                                                                                                   <  1:1696260/140‑1 (MQ=255)
                   ggCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGat                                                                                                                   >  1:91295/1‑140 (MQ=255)
                      aGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATc                                                                                                                >  2:1528338/1‑140 (MQ=255)
                        gaagaaAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTg                                                                                                              >  1:362552/1‑140 (MQ=255)
                           gaaAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCgg                                                                                                           >  2:2341393/1‑140 (MQ=255)
                             aaGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCa                                                                                                         <  1:1528338/140‑1 (MQ=255)
                              aGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCaa                                                                                                        >  2:828874/1‑140 (MQ=255)
                               gTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAAt                                                                                                       <  1:1374345/140‑1 (MQ=255)
                                  atatAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATgcg                                                                                                    <  1:1631335/140‑1 (MQ=255)
                                  atatAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATgcg                                                                                                    <  1:199605/140‑1 (MQ=255)
                                   tataGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGatat                                                                                                                 <  1:1710974/126‑1 (MQ=255)
                                   tataGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGatat                                                                                                                 >  2:1710974/1‑126 (MQ=255)
                                   tataGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATgcgc                                                                                                   >  2:346237/1‑140 (MQ=255)
                                    ataGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGcc                                                                                                  <  2:38500/140‑1 (MQ=255)
                                     taGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCg                                                                                                 >  2:2104931/1‑140 (MQ=255)
                                         cGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCa                                                                                             <  1:1055140/140‑1 (MQ=255)
                                          gTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGGAATGCGCCGTTCAg                                                                                            >  1:1154894/1‑140 (MQ=255)
                                          gTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAg                                                                                            >  2:2299103/1‑140 (MQ=255)
                                             gCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGTCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTgg                                                                                         >  2:111506/1‑140 (MQ=255)
                                             gCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTgg                                                                                         >  2:645585/1‑140 (MQ=255)
                                             gCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTgg                                                                                         >  2:297522/1‑140 (MQ=255)
                                                       aCCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGc                                                                               >  1:638455/1‑140 (MQ=255)
                                                         cATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCtt                                                                             <  2:1079900/140‑1 (MQ=255)
                                                               cA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGAcgc                                                                       <  1:36310/140‑1 (MQ=255)
                                                                a‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCtttcccgcg                                                                      >  2:1975524/1‑133 (MQ=255)
                                                                a‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGAcgcg                                                                      >  2:1459459/1‑140 (MQ=255)
                                                                   gCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCgg                                                                     <  1:163749/140‑1 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTTTGCCGCTTTGTCGCggg                                                                    >  2:1081418/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggt                                                                    >  2:639595/1‑139 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                                                                    >  1:1945944/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                                                                    >  1:1599310/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                                                                    >  2:149981/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                                                                    >  2:272968/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                                                                    >  1:1759617/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                                                                    >  2:669352/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCggg                                                                    >  1:384229/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCCCTTCGACGCggt                                                                    >  2:887729/1‑139 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTCTTCTGCTTCGTCGCggg                                                                    >  2:2160803/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGC‑GTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGGCCCCTCGACGCGGGt                                                                   >  2:394199/1‑140 (MQ=255)
                                                                    cACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCCTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCCCTTCGACGCcgg                                                                    >  2:691891/1‑140 (MQ=255)
                                                                     ccccGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGt                                                                   <  1:839239/139‑1 (MQ=255)
                                                                      cccGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTACACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGtt                                                                  <  2:1855747/140‑1 (MQ=255)
                                                                        cGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTg                                                                <  1:645585/140‑1 (MQ=255)
                                                                        cGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTg                                                                <  1:1520319/140‑1 (MQ=255)
                                                                         gACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTTTGCCGCTTCGACGCGGGTTTgc                                                               >  2:497586/1‑140 (MQ=255)
                                                                         gACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCTACGCGGGTTTgt                                                               >  2:1957810/1‑139 (MQ=255)
                                                                         gACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgc                                                               >  1:558612/1‑140 (MQ=255)
                                                                           ccGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgcgc                                                             <  1:1992344/140‑1 (MQ=255)
                                                                           ccGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgcgc                                                             <  1:604247/140‑1 (MQ=255)
                                                                           ccGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgcgc                                                             <  2:558612/140‑1 (MQ=255)
                                                                           ccGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTgcgc                                                             <  2:649139/140‑1 (MQ=255)
                                                                           ccGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGC‑GTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGcc                                                            <  1:394199/140‑1 (MQ=255)
                                                                              ccTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTg                                                          <  1:2160803/140‑1 (MQ=255)
                                                                              ccTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTg                                                          <  1:580128/140‑1 (MQ=255)
                                                                              ccTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTg                                                          <  2:1945944/140‑1 (MQ=255)
                                                                                tGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa                                                        <  1:1464624/140‑1 (MQ=255)
                                                                                tGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa                                                        <  1:1042488/140‑1 (MQ=255)
                                                                                tGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa                                                        <  1:272968/140‑1 (MQ=255)
                                                                                tGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa                                                        <  2:1394878/140‑1 (MQ=255)
                                                                                tGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa                                                        <  1:1977916/140‑1 (MQ=255)
                                                                                              cGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGgtgcgt                                          <  1:2104931/140‑1 (MQ=255)
                                                                                               gCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa                                                        <  2:1108209/125‑1 (MQ=255)
                                                                                               gCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGaa                                                        >  1:1108209/1‑125 (MQ=255)
                                                                                                ccTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGgtgcgtgc                                        <  2:91295/140‑1 (MQ=255)
                                                                                                 cTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGcc                                       <  1:2341393/140‑1 (MQ=255)
                                                                                                 cTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGcc                                       <  2:559415/140‑1 (MQ=255)
                                                                                                  tGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCg                                      <  2:1606325/140‑1 (MQ=255)
                                                                                                   ggCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGGTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTTAATGATATTTGGGCGTGgcgc                                     >  1:1874659/1‑140 (MQ=255)
                                                                                                     cTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGGTTGCGCCTGAATGATATTGGTGCGTGCCGCtt                                   >  1:1284074/1‑140 (MQ=255)
                                                                                                            aCCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGc                            <  1:1081418/140‑1 (MQ=255)
                                                                                                            aCCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGc                            <  1:828874/140‑1 (MQ=255)
                                                                                                            aCCCGATACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGc                            <  1:669352/140‑1 (MQ=255)
                                                                                                                  tACTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCttt                      >  1:1606309/1‑140 (MQ=255)
                                                                                                                    cTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCTCTGTCATCGATATCTGCGGCAGTGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAg                    <  2:1550976/140‑1 (MQ=255)
                                                                                                                    cTGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAg                    <  1:2299103/140‑1 (MQ=255)
                                                                                                                     tGCACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGa                   <  1:1282558/140‑1 (MQ=255)
                                                                                                                       cACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAg                 >  2:1118621/1‑140 (MQ=255)
                                                                                                                       cACGCGTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCCTCGACGCGGGGTTGGGCCTGAATGCTATTGGTGCGTGCCGCCTTGATTGCCGCtttttaat                 >  2:1900226/1‑135 (MQ=255)
                                                                                                                          gcgTCCGTCACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGCATGATATTGGTGCGCGCCGCTTCTATAGCCGCTTTAGAAGCCg              <  2:1599310/140‑1 (MQ=255)
                                                                                                                            gtccgtcACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGAt            >  2:1765983/1‑140 (MQ=255)
                                                                                                                               cgtcACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCACCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGGTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATAcc         >  1:1403395/1‑140 (MQ=255)
                                                                                                                                 tcACGCGGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTg       <  1:111506/140‑1 (MQ=255)
                                                                                                                                      cgGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCtt  <  1:149981/140‑1 (MQ=255)
                                                                                                                                      cgGTGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGGTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCtt  >  1:611063/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CGTGCCCGCCTGTTCGGTTGGCAGGAAGAAAGTCATATAGACGTCGCTGAGATCGACCATATTCA‑‑GCACCCGACCGCCTGCCGCCAGCACTTCGCCTGGCTCGGCAACCCGATACTGCACGCGTCCGTCACGCGGGGCTTTCAGTTCGCTGTCATCGATATCTGCGGCAATGCGCCGTTCAGTGGCTTGTGCCGCTTCGACGCGGGTTTGCGCCTGAATGATATTGGTGCGTGCCGCTTCTATAGCCGCTTTAGAAGCCGATACCTGAGCTT  >  NC_000913/3629820‑3630091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A