Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F48 I1 R1 61 131.2 4447032 99.1% 4407008 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,639,413 C→A S103I (AGC→ATC)  uspB ← putative universal stress (ethanol tolerance) protein B

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,639,4130CA100.0% 635.1 / NA 177S103I (AGC→ATC) uspBputative universal stress (ethanol tolerance) protein B
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (89/88);  total (89/88)

Only 100 of 180 total aligned reads displayed.

GTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGCTGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACGAGACGCACCTG  >  NC_000913/3639278‑3639546
                                                                                                                                       |                                                                                                                                     
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGac                                                                                                                                   <  1:423741/140‑1 (MQ=255)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGac                                                                                                                                   <  1:115040/140‑1 (MQ=255)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGac                                                                                                                                   <  2:1398341/140‑1 (MQ=255)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGac                                                                                                                                   <  2:1785524/140‑1 (MQ=255)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGac                                                                                                                                   <  2:209991/140‑1 (MQ=255)
gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGac                                                                                                                                   <  1:1413149/140‑1 (MQ=255)
   ggCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCCGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATTCCAAATCATCAATGCAATCAGGATGaccac                                                                                                                                >  2:769030/1‑140 (MQ=255)
    gCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccacc                                                                                                                               >  2:1819548/1‑140 (MQ=255)
     ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccacca                                                                                                                              <  2:2017820/140‑1 (MQ=255)
     ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccacca                                                                                                                              <  1:361973/140‑1 (MQ=255)
     ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccacca                                                                                                                              >  1:1445982/1‑140 (MQ=255)
     ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccacca                                                                                                                              <  1:1199460/140‑1 (MQ=255)
     ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccacca                                                                                                                              >  2:509647/1‑140 (MQ=255)
     ccTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccacca                                                                                                                              <  2:2167737/140‑1 (MQ=255)
       tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccaccacc                                                                                                                            >  2:710631/1‑140 (MQ=255)
       tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccaccacc                                                                                                                            <  1:1241969/140‑1 (MQ=255)
       tGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccaccacc                                                                                                                            <  2:2049679/140‑1 (MQ=255)
         aTAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAg                                                                                                                          >  1:1527177/1‑140 (MQ=255)
         aTAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAg                                                                                                                          >  2:673297/1‑140 (MQ=255)
         aTAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAg                                                                                                                          >  1:1934173/1‑140 (MQ=255)
         aTAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAg                                                                                                                          >  2:1548965/1‑140 (MQ=255)
         aTAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAg                                                                                                                          >  2:1522683/1‑140 (MQ=255)
         aTAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAg                                                                                                                          >  2:957504/1‑140 (MQ=255)
           aaGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGAc                                                                                                                        <  2:1527177/140‑1 (MQ=255)
            aGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGAcc                                                                                                                       <  1:1548965/140‑1 (MQ=255)
              cGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccac                                                                                                                                >  1:2170593/1‑129 (MQ=255)
              cGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGaccac                                                                                                                                <  2:2170593/129‑1 (MQ=255)
              cGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACcac                                                                                                                     >  1:1001430/1‑140 (MQ=255)
               gTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACcaca                                                                                                                    <  2:275253/140‑1 (MQ=255)
                 aGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACcacaca                                                                                                                  <  1:957504/140‑1 (MQ=255)
                 aGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACcacaca                                                                                                                  <  2:1587055/140‑1 (MQ=255)
                   cgcATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGAccaccacca                                                                                                                           >  2:1020753/1‑129 (MQ=255)
                   cgcATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAAt                                                                                                                >  2:1602208/1‑140 (MQ=255)
                   cgcATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAAt                                                                                                                >  2:1655519/1‑140 (MQ=255)
                   cgcATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAAt                                                                                                                >  2:994393/1‑140 (MQ=255)
                   cgcATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAAt                                                                                                                >  1:1479875/1‑140 (MQ=255)
                        cAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCt                                                                                                           >  2:1294257/1‑140 (MQ=255)
                        cAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCt                                                                                                           >  1:1996313/1‑140 (MQ=255)
                          ggCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTgg                                                                                                         <  1:989220/140‑1 (MQ=255)
                          agCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTgg                                                                                                         <  2:887722/139‑1 (MQ=255)
                               ttttGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGa                                                                                                    >  2:944404/1‑140 (MQ=255)
                                  tGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATa                                                                                                 <  2:1270782/140‑1 (MQ=255)
                                    cGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATaaa                                                                                               >  1:1901994/1‑140 (MQ=255)
                                         gTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGcc                                                                                          >  2:1410074/1‑140 (MQ=255)
                                           aaTCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGa                                                                                        <  1:1424718/140‑1 (MQ=255)
                                              cAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGc                                                                                     >  2:880566/1‑140 (MQ=255)
                                               aGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCa                                                                                    <  1:944404/140‑1 (MQ=255)
                                                 tctcGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGa                                                                                        <  2:278608/134‑1 (MQ=255)
                                                 tctcGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGa                                                                                        >  1:278608/1‑134 (MQ=255)
                                                           gTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAgc                                                                        >  1:999008/1‑140 (MQ=255)
                                                           gTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAgc                                                                        >  2:434945/1‑140 (MQ=255)
                                                           gTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAgc                                                                        >  2:212387/1‑140 (MQ=255)
                                                             cAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAgcgg                                                                      <  2:1901994/140‑1 (MQ=255)
                                                                tttACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGa                                                                   <  1:308891/140‑1 (MQ=255)
                                                                tttACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGa                                                                   <  2:1001430/140‑1 (MQ=255)
                                                                  tACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAAt                                                                 <  1:2044511/140‑1 (MQ=255)
                                                                  tACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAAt                                                                 <  1:673297/140‑1 (MQ=255)
                                                                  tACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAAt                                                                 <  1:1837875/140‑1 (MQ=255)
                                                                     tGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATaaa                                                              >  1:2107248/1‑140 (MQ=255)
                                                                         ccGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtca                                                          <  1:930078/140‑1 (MQ=255)
                                                                         ccGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtca                                                          <  1:730553/140‑1 (MQ=255)
                                                                         ccGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtca                                                          >  2:72752/1‑140 (MQ=255)
                                                                         ccGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtca                                                          <  1:2082847/140‑1 (MQ=255)
                                                                          cGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtcat                                                         >  2:176081/1‑140 (MQ=255)
                                                                          cGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtcat                                                         >  1:1366735/1‑140 (MQ=255)
                                                                          cGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtcat                                                         >  1:102977/1‑140 (MQ=255)
                                                                            cTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtcatca                                                       >  1:1354415/1‑140 (MQ=255)
                                                                            cTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATtcatca                                                       >  1:542074/1‑140 (MQ=255)
                                                                                      gCGTTATTATTGCTGTAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTgatgat                                             <  2:202822/140‑1 (MQ=255)
                                                                                      gCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTgatgat                                             <  2:1366735/140‑1 (MQ=255)
                                                                                             tattGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATa                                      <  2:862626/140‑1 (MQ=255)
                                                                                             tattGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCAGCGAATAAATTCATCATCGTGATGATCGCGATa                                      <  1:1655519/140‑1 (MQ=255)
                                                                                                tGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACg                                   <  2:1445982/140‑1 (MQ=255)
                                                                                                tGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACg                                   <  2:1917294/140‑1 (MQ=255)
                                                                                                tGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACg                                   <  1:850588/140‑1 (MQ=255)
                                                                                                 gCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGt                                  <  1:176081/140‑1 (MQ=255)
                                                                                                  cTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGaacgttgg                                 >  2:366510/1‑133 (MQ=255)
                                                                                                    gAAGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTgg                               >  2:1331351/1‑140 (MQ=255)
                                                                                                     aaGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAAATGCCGACGCACCCGCTAACAGCGGAGAATAAATTCATCATCGTGATGATCGCGATAACGTTggg                              <  2:1479875/140‑1 (MQ=255)
                                                                                                      aGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGc                             <  2:1864847/140‑1 (MQ=255)
                                                                                                      aGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGc                             <  2:1950831/140‑1 (MQ=255)
                                                                                                      aGTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGc                             >  1:1554326/1‑140 (MQ=255)
                                                                                                       gTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCa                            <  2:1107512/140‑1 (MQ=255)
                                                                                                       gTGCTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCa                            <  1:188536/140‑1 (MQ=255)
                                                                                                          cTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCGTCATCGTGATGATCGCGATAACGTTGGGCATAg                         >  2:318723/1‑140 (MQ=255)
                                                                                                          cTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAg                         >  2:1103193/1‑140 (MQ=255)
                                                                                                          cTTAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAg                         >  2:1342007/1‑140 (MQ=255)
                                                                                                            tAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGat                       >  2:471368/1‑140 (MQ=255)
                                                                                                            tAATGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGat                       >  1:1286634/1‑140 (MQ=255)
                                                                                                             aaTGCCAAATCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGata                      >  2:244422/1‑140 (MQ=255)
                                                                                                                   aaaTCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCaa                <  1:710631/140‑1 (MQ=255)
                                                                                                                    aaTCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGGCGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCaaa               <  1:1103193/140‑1 (MQ=255)
                                                                                                                    aaTCATCAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCaaa               >  1:309746/1‑140 (MQ=255)
                                                                                                                     atcatcAATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAAc              >  2:1058111/1‑140 (MQ=255)
                                                                                                                      tcatcaATGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACg             <  1:445257/140‑1 (MQ=255)
                                                                                                                           aaTGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACGAGACg        <  1:840633/140‑1 (MQ=255)
                                                                                                                             tGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACGAGACGCa      <  1:879144/140‑1 (MQ=255)
                                                                                                                             tGCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACGAGACGCa      <  1:1007254/140‑1 (MQ=255)
                                                                                                                              gCAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACGAGACGCAc     <  1:471368/140‑1 (MQ=255)
                                                                                                                               cAATCAGGATGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACGAGACGCAcc    <  1:244422/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                     
GTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCTTTTTTTATGCGTTATTATTGCTGAAGTGCTTAATGCCAAATCATCAATGCAATCAGGCTGACCACCACCAGACCACACAATGCGCTGGTCAGAATAAACTGCCGACGCACCCGCTCACAGCGGCGAATAAATTCATCATCGTGATGATCGCGATAACGTTGGGCATAGATATACCAAACGAGACGCACCTG  >  NC_000913/3639278‑3639546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A