Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A18 F48 I1 R1	70	76.3	2572620	98.7%	2539175	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,641,690	G→T	E277* (GAA→TAA)	dtpB →	dipeptide/tripeptide:H(+) symporter DtpB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,641,690	0	G	T	100.0%	268.0 / NA	75	E277* (GAA→TAA)	dtpB	dipeptide/tripeptide:H(+) symporter DtpB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (39/36); total (39/36)

ATGCACAACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCGAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAACCCGTTCTGGG  >  NC_000913/3641555‑3641825

aTGCACAACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGc                                                                                                                                     >  1:287594/1‑140 (MQ=255)

  gCACAACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCgg                                                                                                                                   <  1:632734/140‑1 (MQ=255)

  gCACAACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCgg                                                                                                                                   <  2:624466/140‑1 (MQ=255)

    acaACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCggtg                                                                                                                                 <  1:602849/140‑1 (MQ=255)

    acaACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCggtg                                                                                                                                 <  1:154518/140‑1 (MQ=255)

    acaACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCggtg                                                                                                                                 <  2:254927/140‑1 (MQ=255)

     caACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCggtgg                                                                                                                                >  1:638758/1‑140 (MQ=255)

       aCGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCggtggt                                                                                                                               >  2:666905/1‑139 (MQ=255)

       aCGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTAAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCggtggt                                                                                                                               <  1:666905/139‑1 (MQ=255)

        cGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGgtgt                                                                                                                             >  1:579996/1‑140 (MQ=255)

          tAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGttt                                                                                                                           <  1:1071430/140‑1 (MQ=255)

             aaGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTAc                                                                                                                        >  1:1167815/1‑140 (MQ=255)

              aGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACa                                                                                                                       <  2:1008385/140‑1 (MQ=255)

              aGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACa                                                                                                                       <  1:726850/140‑1 (MQ=255)

              aGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACa                                                                                                                       <  1:578744/140‑1 (MQ=255)

               gTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACAt                                                                                                                      <  1:501685/140‑1 (MQ=255)

                tCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACAtt                                                                                                                     >  2:749047/1‑140 (MQ=255)

                  gCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATtct                                                                                                                   >  1:733468/1‑140 (MQ=255)

                  gCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATtct                                                                                                                   >  2:407738/1‑140 (MQ=255)

                    cAATCTGGTGCTGATTGTTCTCTCCAACGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTctct                                                                                                                 >  1:320204/1‑140 (MQ=255)

                            tgttGATTGTTCTCTCCATCGTCGTAACCATCATCTTCTTTCGTCAGGCATTAAAGCTGTTTAAAACCGTGCGCAATAACATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGATTTACATTCTCTAAGCCCat                                                                                                         >  2:698415/4‑139 (MQ=255)

                               tGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATg                                                                                                      >  1:880825/1‑140 (MQ=255)

                                 aTTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGcc                                                                                                    >  2:56201/1‑140 (MQ=255)

                                   tGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCaa                                                                                                  >  1:344341/1‑140 (MQ=255)

                                   tGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCaa                                                                                                  <  2:259907/140‑1 (MQ=255)

                                   tGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCaa                                                                                                  <  1:402536/140‑1 (MQ=255)

                                      tctctcCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACAt                                                                                               <  2:638758/140‑1 (MQ=255)

                                      tctctcCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACAt                                                                                               <  2:1284769/140‑1 (MQ=255)

                                      tctctcCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACAt                                                                                               <  2:830367/140‑1 (MQ=255)

                                      tctctcCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACAGTCTCTACGCCCAGATGCCAACAt                                                                                               >  2:764907/1‑140 (MQ=255)

                                           ccATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTg                                                                                          >  2:775107/1‑140 (MQ=255)

                                               cgtcgtCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAAct                                                                                      >  2:753290/1‑140 (MQ=255)

                                               cgtcgtCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAAct                                                                                      >  2:895990/1‑140 (MQ=255)

                                               cgtcgtCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAAct                                                                                      >  2:942986/1‑140 (MQ=255)

                                                  cgtcACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAActtct                                                                                   <  1:738997/140‑1 (MQ=255)

                                                  cgtcACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAActtct                                                                                   <  1:565000/140‑1 (MQ=255)

                                                    tcACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAActtct                                                                                   <  1:424036/138‑1 (MQ=255)

                                                    tcACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAActtct                                                                                   >  2:424036/1‑138 (MQ=255)

                                                    tcACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCttt                                                                                 >  1:543267/1‑140 (MQ=255)

                                                    tcACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCttt                                                                                 >  2:1038342/1‑140 (MQ=255)

                                                      aCCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGc                                                                               >  1:433962/1‑140 (MQ=255)

                                                            atcTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATcaa                                                                         >  2:1224309/1‑140 (MQ=255)

                                                              cttcttTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATcaaca                                                                       <  2:344341/140‑1 (MQ=255)

                                                                  tttCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGt                                                                   >  2:3210/1‑140 (MQ=255)

                                                                  tttCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGt                                                                   <  2:234278/140‑1 (MQ=255)

                                                                  tttCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGt                                                                   <  1:1229948/140‑1 (MQ=255)

                                                                   ttCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTg                                                                  <  1:221334/140‑1 (MQ=255)

                                                                   ttCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTg                                                                  <  1:797687/140‑1 (MQ=255)

                                                                           gCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGa                                                          >  2:871679/1‑140 (MQ=255)

                                                                                     tGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGt                                                >  2:495361/1‑140 (MQ=255)

                                                                                     tGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGt                                                >  2:647215/1‑140 (MQ=255)

                                                                                     tGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGt                                                >  2:838514/1‑140 (MQ=255)

                                                                                      ggATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGtt                                               >  1:1002670/1‑140 (MQ=255)

                                                                                       gATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGttt                                              <  2:597702/140‑1 (MQ=255)

                                                                                        aTAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGtttt                                             >  2:234457/1‑140 (MQ=255)

                                                                                        aTAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCAGtttt                                             >  2:1213676/1‑140 (MQ=255)

                                                                                         tAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTTGGttttt                                            >  1:333327/1‑140 (MQ=255)

                                                                                                 ggCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAAc                                    >  1:90699/1‑140 (MQ=255)

                                                                                                 ggCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAAc                                    >  1:807099/1‑140 (MQ=255)

                                                                                                      aaTAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGt                               <  1:573212/140‑1 (MQ=255)

                                                                                                      aaTAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGt                               <  1:56201/140‑1 (MQ=255)

                                                                                                      aaTAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGt                               <  2:831408/140‑1 (MQ=255)

                                                                                                      aaTAAAATGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGt                               <  1:698415/140‑1 (MQ=255)

                                                                                                           aaTGTTTGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCt                          >  1:653847/1‑140 (MQ=255)

                                                                                                               tttGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCa                      <  1:597718/140‑1 (MQ=255)

                                                                                                               tttGTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCa                      <  2:653847/140‑1 (MQ=255)

                                                                                                                  gTCGCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCTGTTTTTCCATCAACCCGGTCAGCTTCCAGgc                   >  1:1118360/1‑140 (MQ=255)

                                                                                                                     gCCTTTGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCt                >  2:1143366/1‑140 (MQ=255)

                                                                                                                         ttGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAAc            <  1:749047/140‑1 (MQ=255)

                                                                                                                          tGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAAcc           <  1:507271/140‑1 (MQ=255)

                                                                                                                          tGTCCTGATGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAAcc           >  2:112536/1‑140 (MQ=255)

                                                                                                                                 aTGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGgcgc                 <  2:278499/127‑1 (MQ=255)

                                                                                                                                 aTGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGgcgc                 >  1:278499/1‑127 (MQ=255)

                                                                                                                                 aTGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAACCCGTTCTg    >  1:482105/1‑140 (MQ=255)

                                                                                                                                 aTGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAACCCGTTCTg    >  1:233121/1‑140 (MQ=255)

                                                                                                                                 aTGCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGAGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAACCCGTTCTg    <  2:1001304/140‑1 (MQ=255)

                                                                                                                                   gCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAACCCGTTCTggg  <  1:407738/140‑1 (MQ=255)

                                                                                                                                   gCTCTAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAACCCGTTCTggg  <  2:733468/140‑1 (MQ=255)

ATGCACAACGTAGAAGTCGCCAATCTGGTGCTGATTGTTCTCTCCATCGTCGTCACCATCATCTTCTTTCGTCAGGCATTCAAGCTGGATAAAACCGGGCGCAATAAAATGTTTGTCGCCTTTGTCCTGATGCTCGAAGCGGTGGTGTTTTACATTCTCTACGCCCAGATGCCAACATCGCTGAACTTCTTTGCCATCAACAACGTGCATCATGAAATTCTCGGTTTTTCCATCAACCCGGTCAGCTTCCAGGCGCTTAACCCGTTCTGGG  >  NC_000913/3641555‑3641825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A