Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F48 I1 R1	45	111.1	3780378	99.2%	3750134	139.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,926,823	G→T	P61T (CCG→ACG)	asnC ←	DNA‑binding transcriptional dual regulator AsnC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,926,823	0	G	T	99.2%	473.1 / ‑3.9	134	P61T (CCG→ACG)	asnC	DNA‑binding transcriptional dual regulator AsnC
Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (72/61); total (73/61)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01

Only 100 of 141 total aligned reads displayed.

CTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATG  >  NC_000913/3926687‑3926957

cTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCt                                                                                                                                     <  1:136194/140‑1 (MQ=255)

cTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCt                                                                                                                                     >  2:1378473/1‑140 (MQ=255)

cTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCt                                                                                                                                     >  2:1467158/1‑140 (MQ=255)

cTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCt                                                                                                                                     <  1:49771/140‑1 (MQ=255)

       ggCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCa                                                                                                                              >  2:178264/1‑140 (MQ=255)

            gTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATAcg                                                                                                                         <  1:1184146/140‑1 (MQ=255)

            gTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATAcg                                                                                                                         <  1:962256/140‑1 (MQ=255)

            gTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATAcg                                                                                                                         <  2:577389/140‑1 (MQ=255)

            gTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATAcg                                                                                                                         <  1:1786891/140‑1 (MQ=255)

              tgtgTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATAcgcg                                                                                                                       <  1:28021/140‑1 (MQ=255)

               gtgtAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATAcgcg                                                                                                                       >  2:860275/1‑139 (MQ=255)

               gtgtAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACgcgc                                                                                                                      <  1:631333/140‑1 (MQ=255)

               gtgtAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACgcgc                                                                                                                      <  1:1467158/140‑1 (MQ=255)

                tgtAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACgcgc                                                                                                                      <  1:1872871/139‑1 (MQ=255)

                tgtAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACgcgc                                                                                                                      >  2:1872871/1‑139 (MQ=255)

                tgtAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGcc                                                                                                                     >  1:1025847/1‑140 (MQ=255)

                 gtAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGccc                                                                                                                    <  1:527415/140‑1 (MQ=255)

                  tAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGcccc                                                                                                                   <  1:725963/140‑1 (MQ=255)

                   aaTAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCg                                                                                                                  <  1:1552058/140‑1 (MQ=255)

                    aTAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCgg                                                                                                                 <  1:527652/140‑1 (MQ=255)

                          ttCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCg                                                                                                                  >  1:10848/1‑133 (MQ=255)

                          ttCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCg                                                                                                                  <  2:10848/133‑1 (MQ=255)

                          ttCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGa                                                                                                           >  2:1886139/1‑140 (MQ=255)

                          ttCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGa                                                                                                           >  1:824378/1‑140 (MQ=255)

                          ttCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGa                                                                                                           >  2:368106/1‑140 (MQ=255)

                          ttCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGa                                                                                                           >  1:1831094/1‑140 (MQ=255)

                          ttCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGa                                                                                                           >  1:1369246/1‑140 (MQ=255)

                           tCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGAt                                                                                                          >  1:1796701/1‑140 (MQ=255)

                            cAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATc                                                                                                         >  2:627126/1‑140 (MQ=255)

                                  cTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGcc                                                                                                   >  1:1713131/1‑140 (MQ=255)

                                      atcaAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCt                                                                                               >  1:1194814/1‑140 (MQ=255)

                                           ggCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCAtt                                                                                          <  1:960176/140‑1 (MQ=255)

                                             cTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCAtttt                                                                                        >  1:1343155/1‑140 (MQ=255)

                                                tCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTtctc                                                                                     >  1:1669133/1‑140 (MQ=255)

                                                    gCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCGGGTAATGATCCCCGCCTGCTTCATTTTCTCTACt                                                                                 <  2:909880/140‑1 (MQ=255)

                                                          ccAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACg                                                                           >  2:599576/1‑140 (MQ=255)

                                                          ccAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGAAAAAGCAGCCTACGTCAAAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACg                                                                           <  2:444036/140‑1 (MQ=255)

                                                              ggcgGAAGGGTAGTTTTTGGCGCTTTTTAATATAATGCCAATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCGGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGaa                                                                       <  2:1591903/139‑1 (MQ=255)

                                                               gcgGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAAt                                                                      <  2:1713131/140‑1 (MQ=255)

                                                               gcgGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAAt                                                                      <  1:619243/140‑1 (MQ=255)

                                                                  gAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGt                                                                   >  1:1600050/1‑140 (MQ=255)

                                                                         aGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGa                                                            <  1:1202547/140‑1 (MQ=255)

                                                                          gTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGAc                                                           <  2:1369246/140‑1 (MQ=255)

                                                                            cTTTGGCGCTCTTTAATATAATCCCGATAAACCAGCCTACGTCATAACCGACCTGCTGCGTGCTGACATCAATTCGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTg                                                         <  1:876795/140‑1 (MQ=255)

                                                                             tttGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGa                                                        <  1:335057/140‑1 (MQ=255)

                                                                             tttGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGa                                                        >  1:1294098/1‑140 (MQ=255)

                                                                               tGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACg                                                      <  2:1343155/140‑1 (MQ=255)

                                                                                 gcgcTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGcc                                                    >  2:780736/1‑140 (MQ=255)

                                                                                  cgcTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCa                                                   >  1:915984/1‑140 (MQ=255)

                                                                                            aataATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCg                                         <  2:355941/139‑1 (MQ=255)

                                                                                               aaTGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCTCCa                                      >  2:386457/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGATCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGTCGCCAAATTGTTTCGCCAGt                                    >  2:1404362/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATGAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  1:1685352/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  1:552302/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  1:1012762/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  1:1355620/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  2:1659232/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  1:1471000/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  2:45062/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  2:1165554/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  2:1140315/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  2:255177/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  1:395818/1‑140 (MQ=255)

                                                                                                 tGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGt                                    >  1:501885/1‑140 (MQ=255)

                                                                                                   ccGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTc                                  >  1:169516/1‑140 (MQ=255)

                                                                                                   ccGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTc                                  >  2:333956/1‑140 (MQ=255)

                                                                                                   acGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGTGTACATCAATACGCGCCCCGGTATTGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTc                                  <  2:22054/139‑1 (MQ=255)

                                                                                                      aTAAAGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGc                               >  2:223046/1‑140 (MQ=255)

                                                                                                         aaGCAGCCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTa                            <  2:911557/140‑1 (MQ=255)

                                                                                                           gcagcCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAg                          <  1:333956/140‑1 (MQ=255)

                                                                                                            cagcCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGATTCGCCAGTTCGGCGTAAGc                         >  2:1275130/1‑140 (MQ=255)

                                                                                                             agcCTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCg                        >  2:1329233/1‑140 (MQ=255)

                                                                                                               ccTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGt                      >  1:278643/1‑140 (MQ=255)

                                                                                                                cTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTg                     >  2:536713/1‑140 (MQ=255)

                                                                                                                cTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTg                     >  2:1149800/1‑140 (MQ=255)

                                                                                                                cTACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTg                     <  2:109753/140‑1 (MQ=255)

                                                                                                                 tACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTgc                    <  1:1659232/140‑1 (MQ=255)

                                                                                                                 tACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTgc                    <  2:1294098/140‑1 (MQ=255)

                                                                                                                 tACGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTgc                    <  1:1140315/140‑1 (MQ=255)

                                                                                                                  aCGTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTgcg                   <  2:1685352/140‑1 (MQ=255)

                                                                                                                    gTCATACCCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGACCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTgcgcg                 <  1:296999/140‑1 (MQ=255)

                                                                                                                    gTCATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTgcgcg                 <  2:824378/140‑1 (MQ=255)

                                                                                                                      cATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCa               <  2:1355620/140‑1 (MQ=255)

                                                                                                                      cATAACCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCa               <  1:877574/140‑1 (MQ=255)

                                                                                                                      aaTAACCGAGCTGCTTCGTGCTGACATCAATCCGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCa               <  2:1844214/139‑1 (MQ=255)

                                                                                                                         aaCCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTg            >  1:760557/1‑140 (MQ=255)

                                                                                                                         aaCCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTg            <  1:1210553/140‑1 (MQ=255)

                                                                                                                         aaCCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTg            >  2:1796049/1‑140 (MQ=255)

                                                                                                                         aaCCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTg            >  1:1060596/1‑140 (MQ=255)

                                                                                                                         aaCCGAGCTGCTTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTg            >  2:689880/1‑140 (MQ=255)

                                                                                                                         aaCCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTg            >  1:1597761/1‑140 (MQ=255)

                                                                                                                                ctgctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCAttt     >  2:557676/1‑139 (MQ=255)

                                                                                                                                ctgctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTa     >  1:242308/1‑140 (MQ=255)

                                                                                                                                ctgctTCGTGCTGACATAAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTa     <  1:1018957/140‑1 (MQ=255)

                                                                                                                                 tgctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTaa    <  2:854060/140‑1 (MQ=255)

                                                                                                                                 tgctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTaa    <  2:1471000/140‑1 (MQ=255)

                                                                                                                                  gctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAAt   <  1:536713/140‑1 (MQ=255)

                                                                                                                                   ctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAAtt  >  2:119553/1‑139 (MQ=255)

                                                                                                                                   ctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATg  <  2:1200285/140‑1 (MQ=255)

                                                                                                                                   ctTCGTGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATg  <  2:169516/140‑1 (MQ=255)

CTGTAGTGGCCGGTTGTGTAATAGGCTTCAGTGACTTCATCAAGGCTTTCCAGCTTTGCCAGCGCGGAAGGGTAGTCTTTGGCGCTCTTTAATATAATGCCGATAAAGCAGCCTACGTCATAACCGAGCTGCTTCGGGCTGACATCAATACGCGCCCCGGTAATGATCCCCGCCTGCTTCATTTTCTCTACTCGAACGTGAATCGTCCCCGGACTGACGCCAAATTGTTTCGCCAGTTCGGCGTAAGCGGTGCGCGCATTGCCCATTAATG  >  NC_000913/3926687‑3926957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A